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Summary[edit source | edit]

  • pan ID?: SAUPAN005984000
  • symbol?:
  • description?: putative lipoprotein
  • strand?: +
  • coordinates?: 6044856..6045566
  • synteny block?: BlockID0047280
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2373
    08BA02176:
    C248_2485
    11819-97:
    MS7_2450
    71193:
    ST398NM01_2488
    ECT-R 2:
    ECTR2_2294
    ED133:
    SAOV_2486
    ED98:
    SAAV_2502
    HO 5096 0412:
    SAEMRSA15_23360
    JH1:
    SaurJH1_2511
    JH9:
    SaurJH9_2462
    JKD6008:
    SAA6008_02477
    JKD6159:
    SAA6159_02334
    LGA251:
    SARLGA251_22170
    M013:
    M013TW_2399
    MRSA252:
    SAR2526
    MSHR1132:
    SAMSHR1132_22640
    MSSA476:
    SAS2328
    Mu3:
    SAHV_2420
    Mu50:
    SAV2436
    MW2:
    MW2360
    RF122:
    SAB2318
    ST398:
    SAPIG2488
    T0131:
    SAT0131_02633
    TCH60:
    HMPREF0772_10752
    TW20:
    SATW20_25650
    USA300_TCH1516:
    USA300HOU_2422
    VC40:
    SAVC_11055

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYV
    N315            MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYV
    NCTC8325        -----------------------------MMLQYNNQHIPATEIMRHWPTHPNNPHKGYV
    Newman          MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYV
    USA300_FPR3757  -----------------------------MMLQYNNQHIPATEIMRHWPTHPNNPHKGYV
                                                 *******************************

    COL             GHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLG
    N315            GHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLG
    NCTC8325        GHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLG
    Newman          GHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLG
    USA300_FPR3757  GHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLG
                    ************************************************************

    COL             SKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQI
    N315            SKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQI
    NCTC8325        SKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQI
    Newman          SKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQI
    USA300_FPR3757  SKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQI
                    ************************************************************

    COL             IKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
    N315            IKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
    NCTC8325        IKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
    Newman          IKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
    USA300_FPR3757  IKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
                    **************************************