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Summary[edit source | edit]

  • pan ID?: SAUPAN006004000
  • symbol?:
  • description?: molecular chaperone GroEL

      descriptions from strain specific annotations:

    • molecular chaperone GroEL
    • pseudogene
  • strand?: -
  • coordinates?: 6063569..6064168
  • synteny block?: BlockID0047480
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2386
    08BA02176:
    C248_2500
    11819-97:
    MS7_2463
    71193:
    ST398NM01_2502
    ECT-R 2:
    ECTR2_2307
    ED133:
    SAOV_2500c
    ED98:
    SAAV_2516
    HO 5096 0412:
    SAEMRSA15_23490
    JH1:
    SaurJH1_2525
    JH9:
    SaurJH9_2476
    JKD6008:
    SAA6008_02491
    JKD6159:
    SAA6159_02347
    LGA251:
    SARLGA251_22300
    M013:
    M013TW_2412
    MRSA252:
    SAR2539
    MSHR1132:
    SAMSHR1132_22770
    MSSA476:
    SAS2341
    Mu3:
    SAHV_2433
    Mu50:
    SAV2449
    MW2:
    MW2373
    RF122:
    SAB2331c
    ST398:
    SAPIG2502
    T0131:
    SAT0131_02649 (rpsP)
    TCH60:
    HMPREF0772_10739
    TW20:
    SATW20_25780
    USA300_TCH1516:
    USA300HOU_2439
    VC40:
    SAVC_11120

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHG
    N315            MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHG
    NCTC8325        MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHG
    Newman          MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHG
    USA300_FPR3757  MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHG
                    ************************************************************

    COL             FKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARTEEIKYYLAEAIKA
    N315            FKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARTEEIKYYLAEAIKA
    NCTC8325        FKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARTEEIKYYLAEAIKA
    Newman          FKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARTEEIKYYLAEAIKA
    USA300_FPR3757  FKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARTEEIKYYLAEAIKA
                    ************************************************************

    COL             EKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETRQ
    N315            EKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETKQ
    NCTC8325        EKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETRQ
    Newman          EKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETRQ
    USA300_FPR3757  EKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETRQ
                    **********************************************************:*

    COL             KRVEKYINQILEGKGMHDK
    N315            KRVEKYINQILEGKGMHDK
    NCTC8325        KRVEKYINQILEGKGMHDK
    Newman          KRVEKYINQILEGKGMHDK
    USA300_FPR3757  KRVEKYINQILEGKGMHDK
                    *******************