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Summary[edit source | edit]

  • pan ID?: SAUPAN006016000
  • symbol?:
  • description?: lipoprotein

      descriptions from strain specific annotations:

    • lipoprotein
    • putative lipoprotein
    • lipoprotein, putative
  • strand?: +
  • coordinates?: 6074922..6075386
  • synteny block?: BlockID0047600
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2395
    08BA02176:
    C248_2508
    11819-97:
    MS7_2472
    71193:
    ST398NM01_2509
    ECT-R 2:
    ECTR2_2316
    ED133:
    SAOV_2509
    ED98:
    SAAV_2525
    HO 5096 0412:
    SAEMRSA15_23570
    JH1:
    SaurJH1_2534
    JH9:
    SaurJH9_2485
    JKD6008:
    SAA6008_02500
    JKD6159:
    SAA6159_02356
    LGA251:
    SARLGA251_22390
    M013:
    M013TW_2419
    MRSA252:
    SAR2546
    MSHR1132:
    SAMSHR1132_22840
    MSSA476:
    SAS2350
    Mu3:
    SAHV_2442
    Mu50:
    SAV2458
    MW2:
    MW2382
    RF122:
    SAB2342
    ST398:
    SAPIG2509
    T0131:
    SAT0131_02658 (isaB)
    TCH60:
    HMPREF0772_10730
    TW20:
    SATW20_25870
    USA300_TCH1516:
    USA300HOU_2449
    VC40:
    SAVC_11165

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKKLCSLIVVALVCIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKY
    N315            MKKLCSLIVVALICIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKY
    NCTC8325        MKKLCSLIVVALVCIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKY
    Newman          MKKLCSLIVVALVCIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKY
    USA300_FPR3757  MKKLCSLIVVALVCIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKY
                    ************:***********************************************

    COL             DDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGV
    N315            DDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGV
    NCTC8325        DDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGV
    Newman          DDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGV
    USA300_FPR3757  DDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGV
                    ************************************************************

    COL             STKENKDISFEKLEKQLKHRGLKEKDKMDDK
    N315            STKENKDISFEKLEKQLKHRGLKEKDKMDDK
    NCTC8325        STKENKDISFEKLEKQLKHRGLKEKDKMDDK
    Newman          STKENKDISFEKLEKQLKHRGLKEKDKMDDK
    USA300_FPR3757  STKENKDISFEKLEKQLKHRGLKEKDKMDDK
                    *******************************