From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN006078000
  • symbol?:
  • description?: tandem-type lipoprotein

      descriptions from strain specific annotations:

    • tandem-type lipoprotein
    • tandem lipoprotein
    • pseudogene
    • putative lipoprotein
    • putative staphylococcal tandem lipoprotein
  • strand?: -
  • coordinates?: 6123441..6133678
  • synteny block?: BlockID0048190
  • occurrence?: in 41% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    MS7_2493
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_2553
    HO 5096 0412:
    SAEMRSA15_23860
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    SAA6159_02381
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS2374
    Mu3:
    Mu50:
    MW2:
    MW2407
    RF122:
    SAB2368c
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_2477
    VC40:
    SAVC_11305

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYPTKNLDDFYDKEG
    NCTC8325        MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYLTKNLDDFYDKEG
    Newman          MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYPTKNLDDFYDKEG
    USA300_FPR3757  MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYPTKNLDDFYDKEG
                    *********************************************** ************

    COL             FRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKG
    NCTC8325        FRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKG
    Newman          FRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKG
    USA300_FPR3757  FRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKG
                    ************************************************************

    COL             YSRSKEKKYPVKMENNRIIPTKPIPDDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNP
    NCTC8325        YSRSKEKKYPVKMENNRIIPTKPIPDDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNP
    Newman          YSRSKEKKYPVKMENNRIIPTKPIPDDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNP
    USA300_FPR3757  YSRSKEKN----------------------------------------------------
                    *******:                                                    

    COL             NVPSYSAKYQLNNDDYNVQQLRKRYHIPTKQAPELKLKGSGNLKGSSVGSKDLEFTFVEN
    NCTC8325        NVPSYSAKYQLNNDDYNVQQLRKRYHIPTKQAPELKLKGSGNLKGSSVGSKDLEFTFVEN
    Newman          NVPSYSAKYQLNNDDYNVQQLRKRYHIPTKQAPELKLKGSGNLKGSSVGSKDLEFTFVEN
    USA300_FPR3757  --------------------ILSRWKI------------------------------IEL
                                        : .*::*                              :* 

    COL             QEENIYFSDSVEFTPSEDDKS
    NCTC8325        QEENIYFSDSVEFTPSEDDKS
    Newman          QEENIYFSDSVEFTPSEDDKS
    USA300_FPR3757  FQQSLYRM-----------TS
                     ::.:*             .*