PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006078000
• symbol^?: —
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • lipoprotein, putative
  • tandem lipoprotein
  • pseudogene
  • putative lipoprotein
  • putative staphylococcal tandem lipoprotein
• strand^?: -
• coordinates^?: 6123441..6133678
• synteny block^?: BlockID0048190
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL2497
N315:
—
NCTC8325:
SAOUHSC_02788
Newman:
NWMN_2384
USA300_FPR3757:
SAUSA300_2429
04-02981:
—
08BA02176:
—
11819-97:
MS7_2493
6850:
RSAU_002330
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_2553
HO 5096 0412:
SAEMRSA15_23860
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_02381
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS2374
Mu3:
—
Mu50:
—
MW2:
MW2407
RF122:
SAB2368c
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_2477
VC40:
SAVC_11305

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYPTKNLDDFYDKEG
  NCTC8325        MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYLTKNLDDFYDKEG
  Newman          MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYPTKNLDDFYDKEG
  USA300_FPR3757  MIHSKKLTLGICLVLLIILIGGCVIMTKTNGRNAQIKENFNKTLSVYPTKNLDDFYDKEG
                  *********************************************** ************
  
  COL             FRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKG
  NCTC8325        FRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKG
  Newman          FRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKG
  USA300_FPR3757  FRDQEFDKRDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVTEITEDSKG
                  ************************************************************
  
  COL             YSRSKEKKYPVKMENNRIIPTKPIPDDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNP
  NCTC8325        YSRSKEKKYPVKMENNRIIPTKPIPDDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNP
  Newman          YSRSKEKKYPVKMENNRIIPTKPIPDDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNP
  USA300_FPR3757  YSRSKEKN----------------------------------------------------
                  *******:                                                    
  
  COL             NVPSYSAKYQLNNDDYNVQQLRKRYHIPTKQAPELKLKGSGNLKGSSVGSKDLEFTFVEN
  NCTC8325        NVPSYSAKYQLNNDDYNVQQLRKRYHIPTKQAPELKLKGSGNLKGSSVGSKDLEFTFVEN
  Newman          NVPSYSAKYQLNNDDYNVQQLRKRYHIPTKQAPELKLKGSGNLKGSSVGSKDLEFTFVEN
  USA300_FPR3757  --------------------ILSRWKI------------------------------IEL
                                      : .*::*                              :* 
  
  COL             QEENIYFSDSVEFTPSEDDKS
  NCTC8325        QEENIYFSDSVEFTPSEDDKS
  Newman          QEENIYFSDSVEFTPSEDDKS
  USA300_FPR3757  FQQSLYRM-----------TS
                   ::.:*             .*