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Summary[edit source | edit]

  • pan ID?: SAUPAN006266000
  • symbol?:
  • description?: TIGR04197 family type VII secretion effector
  • strand?: -
  • coordinates?: 6318888..6319163
  • synteny block?: BlockID0049890
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2525
    08BA02176:
    C248_2647
    11819-97:
    MS7_2593
    71193:
    ST398NM01_2637
    ECT-R 2:
    ECTR2_2441
    ED133:
    SAOV_2632c
    ED98:
    SAAV_2653
    HO 5096 0412:
    SAEMRSA15_24900
    JH1:
    SaurJH1_2663
    JH9:
    SaurJH9_2609
    JKD6008:
    SAA6008_02646
    JKD6159:
    SAA6159_02484
    LGA251:
    SARLGA251_23610
    M013:
    M013TW_2561
    MRSA252:
    SAR2667
    MSHR1132:
    SAMSHR1132_24020
    MSSA476:
    SAS2473
    Mu3:
    SAHV_2571
    Mu50:
    SAV2587
    MW2:
    MW2507
    RF122:
    SAB2462c
    ST398:
    SAPIG2637
    T0131:
    SAT0131_02821
    TCH60:
    HMPREF0772_10604
    TW20:
    SATW20_27280
    USA300_TCH1516:
    USA300HOU_2581
    VC40:
    SAVC_11815

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLMSKNQSV
    N315            -MSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLISKNQSV
    NCTC8325        MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLMSKNQSV
    Newman          MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLMSKNQSV
    USA300_FPR3757  MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLMSKNQSV
                     ****************************************************:******

    COL             AEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN
    N315            AEAIRNASDSIQKVGEEFNQTDVMIGNEIGKN
    NCTC8325        AEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN
    Newman          AEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN
    USA300_FPR3757  AEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN
                    *****.***.****** *:*************