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Summary[edit source | edit]

  • pan ID?: SAUPAN006292000
  • symbol?: panC
  • description?: pantoate--beta-alanine ligase

      descriptions from strain specific annotations:

    • pantoate--beta-alanine ligase
    • putative pantoate--beta-alanine ligase
    • pantothenate synthetase
  • strand?: -
  • coordinates?: 6340553..6341404
  • synteny block?: BlockID0050080
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2614 (panC)
    N315:
    SA2391 (panC)
    NCTC8325:
    Newman:
    NWMN_2495 (panC)
    USA300_FPR3757:
    04-02981:
    SA2981_2536 (panC)
    08BA02176:
    C248_2657 (panC)
    11819-97:
    MS7_2603 (panC)
    71193:
    ST398NM01_2646
    ECT-R 2:
    ECTR2_2452 (panC)
    ED133:
    SAOV_2642c
    ED98:
    SAAV_2664 (panC)
    HO 5096 0412:
    SAEMRSA15_25010 (panC)
    JH1:
    SaurJH1_2674 (panC)
    JH9:
    SaurJH9_2620 (panC)
    JKD6008:
    SAA6008_02655 (panC)
    JKD6159:
    SAA6159_02494 (panC)
    LGA251:
    SARLGA251_23710 (panC)
    M013:
    M013TW_2575
    MRSA252:
    SAR2676 (panC)
    MSHR1132:
    SAMSHR1132_24130
    MSSA476:
    SAS2483 (panC)
    Mu3:
    SAHV_2582 (panC)
    Mu50:
    SAV2598 (panC)
    MW2:
    MW2517 (panC)
    RF122:
    SAB2471c (panC)
    ST398:
    SAPIG2646 (panC)
    T0131:
    SAT0131_02830 (sbcC)
    TCH60:
    HMPREF0772_10594 (panC)
    TW20:
    SATW20_27370 (panC)
    USA300_TCH1516:
    USA300HOU_2592 (panC)
    VC40:
    SAVC_11860 (panC)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITIVSVFVNP
    N315            MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITVVSVFVNP
    NCTC8325        MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITIVSVFVNP
    Newman          MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITIVSVFVNP
    USA300_FPR3757  MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITIVSVFVNP
                    ****************************************************:*******

    COL             LQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPGELGIDVKVGPLADVLEGA
    N315            LQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDIYPGELGIDVKVGPLADVLEGA
    NCTC8325        LQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPGELGIDVKVGPLADVLEGA
    Newman          LQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPGELGIDVKVGPLADVLEGA
    USA300_FPR3757  LQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPGELGIDVKVGPLADVLEGA
                    **************************************:*********************

    COL             KRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREA
    N315            KRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREA
    NCTC8325        KRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREA
    Newman          KRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREA
    USA300_FPR3757  KRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREA
                    ************************************************************

    COL             DGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRI
    N315            DGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRI
    NCTC8325        DGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISERI
    Newman          DGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRI
    USA300_FPR3757  DGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRI
                    ********************************************************* **

    COL             EEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
    N315            EEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
    NCTC8325        EEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
    Newman          EEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
    USA300_FPR3757  EEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
                    *******************************************