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Summary[edit source | edit]

  • pan ID?: SAUPAN006313000
  • symbol?: betA
  • description?: choline dehydrogenase

      descriptions from strain specific annotations:

    • choline dehydrogenase
    • oxygen-dependent choline dehydrogenase
    • putative choline dehydrogenase
  • strand?: -
  • coordinates?: 6356670..6358379
  • synteny block?: BlockID0050290
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2627 (betA)
    N315:
    SA2405 (betA)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2550 (betA)
    08BA02176:
    C248_2671 (cudB)
    11819-97:
    MS7_2616 (betA)
    71193:
    ST398NM01_2659
    ECT-R 2:
    ECTR2_2465 (betA)
    ED133:
    SAOV_2657c
    ED98:
    SAAV_2678 (betA)
    HO 5096 0412:
    SAEMRSA15_25160 (cudB)
    JH1:
    SaurJH1_2688
    JH9:
    SaurJH9_2634
    JKD6008:
    SAA6008_02669 (betA)
    JKD6159:
    SAA6159_02508 (betA)
    LGA251:
    SARLGA251_23840 (cudB)
    M013:
    M013TW_2589
    MRSA252:
    SAR2690 (cudB)
    MSHR1132:
    SAMSHR1132_24270
    MSSA476:
    SAS2497
    Mu3:
    SAHV_2596 (betA)
    Mu50:
    SAV2612 (betA)
    MW2:
    MW2531 (betA)
    RF122:
    SAB2486c (cudB)
    ST398:
    SAPIG2659 (betA)
    T0131:
    SAT0131_02845
    TCH60:
    HMPREF0772_10579 (betA)
    TW20:
    SATW20_27500 (cudB)
    USA300_TCH1516:
    USA300HOU_2605 (betA)
    VC40:
    SAVC_11920

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
    N315            MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
    NCTC8325        MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
    Newman          MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
    USA300_FPR3757  MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
                    ************************************************************

    COL             GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
    N315            GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
    NCTC8325        GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
    Newman          GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
    USA300_FPR3757  GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
                    ************************************************************

    COL             WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
    N315            WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
    NCTC8325        WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
    Newman          WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
    USA300_FPR3757  WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
                    ************************************************************

    COL             DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
    N315            DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
    NCTC8325        DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
    Newman          DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
    USA300_FPR3757  DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
                    ************************************************************

    COL             TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
    N315            TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
    NCTC8325        TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
    Newman          TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
    USA300_FPR3757  TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
                    ************************************************************

    COL             HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
    N315            HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
    NCTC8325        HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
    Newman          HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
    USA300_FPR3757  HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
                    ************************************************************

    COL             NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
    N315            NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
    NCTC8325        NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
    Newman          NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
    USA300_FPR3757  NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
                    ************************************************************

    COL             EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
    N315            EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
    NCTC8325        EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
    Newman          EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
    USA300_FPR3757  EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
                    ************************************************************

    COL             KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
    N315            KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
    NCTC8325        KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
    Newman          KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
    USA300_FPR3757  KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
                    ************************************************************

    COL             PLEPQYIDYYKHGVHDENEGAIEVKPYAK
    N315            PLEPQYIDYYKHGVHDENEGAIEVKPYAK
    NCTC8325        PLEPQYIDYYKHGVHDENEGAIEVKPYAK
    Newman          PLEPQYIDYYKHGVHDENEGAIEVKPYAK
    USA300_FPR3757  PLEPQYIDYYKHGVHDENEGAIEVKPYAK
                    *****************************