PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006316000
• symbol^?: —
• synonym:
• description^?: GbsR/MarR family transcriptional regulator

  descriptions from strain specific annotations:

  • GbsR/MarR family transcriptional regulator
  • transcriptional regulator, putative
  • ArsR family transcriptional regulator
  • putative regulatory protein
  • putative transcriptional regulator
  • transcriptional regulator-like protein
• strand^?: +
• coordinates^?: 6360354..6360954
• synteny block^?: BlockID0050320
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2630
N315:
SA2407
NCTC8325:
SAOUHSC_02935
Newman:
NWMN_2511
USA300_FPR3757:
SAUSA300_2547
04-02981:
SA2981_2552
08BA02176:
C248_2674
11819-97:
MS7_2618 (cudC)
6850:
RSAU_002454 (cudC)
71193:
ST398NM01_2661
ECT-R 2:
ECTR2_2467
ED133:
SAOV_2659
ED98:
SAAV_2680
HO 5096 0412:
SAEMRSA15_25180
JH1:
SaurJH1_2690
JH9:
SaurJH9_2636
JKD6008:
SAA6008_02671
JKD6159:
SAA6159_02510
LGA251:
SARLGA251_23860
M013:
M013TW_2591
MRSA252:
SAR2692
MSHR1132:
SAMSHR1132_24290
MSSA476:
SAS2499
Mu3:
SAHV_2598
Mu50:
SAV2614
MW2:
MW2533
RF122:
SAB2488
ST398:
SAPIG2661
T0131:
SAT0131_02847
TCH60:
HMPREF0772_10577
TW20:
SATW20_27520
USA300_TCH1516:
USA300HOU_2608
VC40:
SAVC_11930

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             -MTRSQNKQQQLEQAKDIVINSIGQTMDLYGTNRSVGNLYGTMVFEGSMTLDEMRHQLQM
  N315            MMTRSQNKQQQLEQAKDIVINSIGQTMDLYGTNRSVGNLYGTMVFEGSMTLDEMRHQLQM
  NCTC8325        -MTRSQNKQQQLEQAKDIVINSIGQTMDLYGTNRSVGNLYGTMVFEGSMTLDEMRHQLQM
  Newman          -MTRSQNKQQQLEQAKDIVINSIGQTMDLYGTNRSVGNLYGTMVFEGSMTLDEMRHQLQM
  USA300_FPR3757  -MTRSQNKQQQLEQAKDIVINSIGQTMDLYGTNRSVGNLYGTMVFEGSMTLDEMRHQLQM
                   ***********************************************************
  
  COL             SKPSMSAGVKKLQEFDIVKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAV
  N315            SKPSMSAGVKKLQEFDIVKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAV
  NCTC8325        SKPSMSAGVKKLQEFDIVKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAV
  Newman          SKPSMSAGVKKLQEFDIVKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAV
  USA300_FPR3757  SKPSMSAGVKKLQEFDIVKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAV
                  ************************************************************
  
  COL             KDAQAIINSLLESSDLTEAETQEAQKIKAQLDHTHVYYEWLEQLTEAIESGEIFKYFPIP
  N315            KDAQAIINPLLESSDLTEAETQEAQKIKAQLDHTHVYYEWLEQLTEAIESGEIFKYFPIP
  NCTC8325        KDAQAIINPLLESSDLTEAETQEAQKIKAQLDHTHVYYEWLEQLTEAIESGEIFKYFPIP
  Newman          KDAQAIINSLLESSDLTEAETQEAQKIKAQLDHTHVYYEWLEQLTEAIESGEIFKYFPIP
  USA300_FPR3757  KDAQAIINSLLESSDLTEAETQEAQKIKSQLDHTHVYYEWLEQLTEAIESGEIFKYFPIP
                  ********.*******************:*******************************
  
  COL             EQPSDSEN
  N315            EQPSDSEN
  NCTC8325        EQPSDSEN
  Newman          EQPSDSEN
  USA300_FPR3757  EQPSDSEN
                  ********