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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006407000
- symbol?: cap1C
- synonym:
- description?: capsular polysaccharide biosynthesis protein Cap8C
- capsular polysaccharide biosynthesis protein Cap8C
- capsular polysaccharide biosynthesis protein Cap1C
- capsular polysaccharide biosynthesis capC
- capsular polysaccharide biosynthesis protein, CapC
- capsular polysaccharide biosynthesis protein Cap5C
- capsular polysaccharide synthesis protein CapC
- tyrosine-protein phosphatase
- Manganese-dependent protein-tyrosine phosphatase
- putative tyrosine-protein phosphatase capC
- capsular polysaccharide biosynthesis protein
- capsular polysaccharide biosynthesis protein, Cap5C
- capsular polysaccharide biosynthesis protein CapC
- capsule synthesis protein
- phosphotyrosine-protein phosphatase (capsular polysaccharide biosynthesis)
- protein-tyrosine-phosphatase
- putative capsule synthesis protein
- tyrosine-protein phosphatase YwqE
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6457320..6458087
- synteny block?: BlockID0051140
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2601 (capC)
08BA02176:
C248_2732
11819-97:
MS7_2667 (ywqE)
6850:
RSAU_002507 (capC2)
71193:
ST398NM01_2714
ECT-R 2:
ECTR2_2516
ED133:
SAOV_2714c
ED98:
SAAV_2734 (cap1C)
HO 5096 0412:
SAEMRSA15_25690
JH1:
SaurJH1_2743
JH9:
SaurJH9_2686
JKD6008:
SAA6008_02722 (cap1C)
JKD6159:
SAA6159_02558 (cap1C)
LGA251:
SARLGA251_24360
M013:
M013TW_2645
MRSA252:
SAR2743
MSHR1132:
SAMSHR1132_24900
MSSA476:
SAS2548
Mu3:
SAHV_2646
Mu50:
SAV2662
MW2:
MW2582 (capC)
RF122:
SAB2537c
ST398:
SAPIG2714
T0131:
SAT0131_02941
TCH60:
HMPREF0772_10524 (capC)
TW20:
SATW20_28000
USA300_TCH1516:
USA300HOU_2662 (capC)
VC40:
SAVC_12190
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLA
N315 MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLA
NCTC8325 MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLA
Newman MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLA
USA300_FPR3757 MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLA
************************************************************
COL ELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQ
N315 ELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQ
NCTC8325 ELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQ
Newman ELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQ
USA300_FPR3757 ELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQ
************************************************************
COL LFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSL
N315 LFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSL
NCTC8325 LFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSL
Newman LFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSL
USA300_FPR3757 LFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSL
************************************************************
COL QFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
N315 QFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
NCTC8325 QFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
Newman QFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
USA300_FPR3757 QFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLD
************************************************************
COL RPTKPGKVKSFLKWF
N315 RPTKPGKVKSFLKWF
NCTC8325 RPTKPGKVKSFLKWF
Newman RPTKPGKVKSFLKWF
USA300_FPR3757 RPTKPGKVKSFLKWF
***************