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Summary[edit source | edit]

  • pan ID?: SAUPAN006442000
  • symbol?:
  • description?: S-adenosyl-l-methionine hydroxide adenosyltransferase family protein

      descriptions from strain specific annotations:

    • S-adenosyl-l-methionine hydroxide adenosyltransferase family protein
    • DNA-directed RNA polymerase subunit delta
  • strand?: -
  • coordinates?: 6483001..6483837
  • synteny block?: BlockID0051490
  • occurrence?: in 81% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2626
    08BA02176:
    11819-97:
    MS7_2691
    71193:
    ECT-R 2:
    ECTR2_2539
    ED133:
    ED98:
    SAAV_2760
    HO 5096 0412:
    JH1:
    SaurJH1_2767
    JH9:
    SaurJH9_2710
    JKD6008:
    SAA6008_02745
    JKD6159:
    SAA6159_02583
    LGA251:
    M013:
    M013TW_2669
    MRSA252:
    SAR2768
    MSHR1132:
    SAMSHR1132_25140
    MSSA476:
    SAS2571
    Mu3:
    SAHV_2670
    Mu50:
    SAV2686
    MW2:
    MW2605
    RF122:
    SAB2562c
    ST398:
    T0131:
    SAT0131_02965
    TCH60:
    HMPREF0772_10500
    TW20:
    SATW20_28230
    USA300_TCH1516:
    USA300HOU_2688
    VC40:
    SAVC_12305

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
    N315            MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
    NCTC8325        MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
    Newman          MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
    USA300_FPR3757  MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYW
                    ************************************************************

    COL             PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
    N315            PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
    NCTC8325        PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
    Newman          PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
    USA300_FPR3757  PKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSR
                    ************************************************************

    COL             LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGS
    N315            LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREATKNEDSVTGS
    NCTC8325        LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGS
    Newman          LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGS
    USA300_FPR3757  LPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGS
                    *************************************************.**********

    COL             IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
    N315            IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
    NCTC8325        IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
    Newman          IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
    USA300_FPR3757  IDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGE
                    ************************************************************

    COL             PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
    N315            PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
    NCTC8325        PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
    Newman          PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
    USA300_FPR3757  PLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI
                    ******************************************