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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006464000
- symbol?: —
- synonym:
- description?: membrane protein
- membrane protein
- HdeD family acid-resistance protein
- membrane spanning protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6506406..6506919
- synteny block?: BlockID0051710
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2639
08BA02176:
C248_2766
11819-97:
MS7_2705
6850:
RSAU_002545
71193:
ST398NM01_2746
ECT-R 2:
ECTR2_2552
ED133:
SAOV_2743c
ED98:
SAAV_2772
HO 5096 0412:
SAEMRSA15_25990
JH1:
SaurJH1_2780
JH9:
SaurJH9_2723
JKD6008:
SAA6008_02757 (hdeD)
JKD6159:
SAA6159_02594 (hdeD)
LGA251:
SARLGA251_24660
M013:
M013TW_2683
MRSA252:
SAR2780
MSHR1132:
SAMSHR1132_25280
MSSA476:
SAS2584
Mu3:
SAHV_2684
Mu50:
SAV2700
MW2:
MW2619
RF122:
SAB2577c
ST398:
SAPIG2746
T0131:
SAT0131_02977
TCH60:
HMPREF0772_10487
TW20:
SATW20_28350
USA300_TCH1516:
USA300HOU_2702
VC40:
SAVC_12370
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MEKGNQGIKWSSLIMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIVYRRKAK
N315 MEKGNQGIKWSSLIMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIIYRRKAK
NCTC8325 MEKGNQGIKWSSLIMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIVYRRKAK
Newman MEKGNQGIKWSSLIMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIVYRRKAK
USA300_FPR3757 MEKGNQGIKWSSLIMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIVYRRKAK
*****************************************************:******
COL ALVGGNQNWILFMGIVDILFGLLVIFNVGASSAFFIYMFAFWFIFSSISGLFTFSGSGSL
N315 ALVGGNQNWILFMGIVDILFGLIVIFNVGASSAFFIYMFAFWFIFSSIAGLFTFTGSGSL
NCTC8325 ALVGGNQNWILFMGIVDILFGLLVIFNVGASSAFFIYMFAFWFIFSSISGLFTFSGSGSL
Newman ALVGGNQNWILFMGIVDILFGLLVIFNVGASSAFFIYMFAFWFIFSSISGLFTFSGSGSL
USA300_FPR3757 ALVGGNQNWILFMGIVDILFGLLVIFNVGASSAFFIYMFAFWFIFSSISGLFTFSGSGSL
**********************:*************************:*****:*****
COL KLISVIFNLLGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDALA
N315 KLISVIFNLLGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDALA
NCTC8325 KLISVIFNLLGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDALA
Newman KLISVIFNLLGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDALA
USA300_FPR3757 KLISVIFNLLGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDALA
**************************************************