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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN006473000
  • symbol?:
  • description?: integrase/recombinase core subunit

      descriptions from strain specific annotations:

    • integrase/recombinase core subunit
    • pseudogene
    • transposase (pseudogene)
  • strand?: +
  • coordinates?: 6512031..6513046
  • synteny block?: BlockID0051800
  • occurrence?: in 25% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR2784
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    SATW20_28380
    USA300_TCH1516:
    USA300HOU_2706
    VC40:
    SAVC_12390

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MLNSICISYQRKHKEFGHLEGDTIVGRRHGSAIITLVERVSKMIITLRPLGRKATDIENA
    NCTC8325        MLNSICISYQRKHKEFGHLEGDTIVGRRHGSAIITLVERVSKMIITLRPLGRKATDIENA
    Newman          MLNSICISYQRKHKEFGHLEGDTIVGRRHGSAIITLVERVSKMIITLRPLGRKATDIENA
    USA300_FPR3757  MLNSICISYQRKHKEFGHLEGDTIVGRRHGSAIITLVERVSKMIITLRPLGRKATDIENA
                    ************************************************************

    COL             LHSMFSSLPSHIFKSITFDCGKEFSNWKTLCNCHDISIFFADPGTPSQRGLNEHSNGILR
    NCTC8325        LHSMFSSLPSHIFKSITFDCGKEFSNWKTLCNCHDISIFFADPGTPSQRGLNEHSNGILR
    Newman          LHSMFSSLPSHIFKSITFDCGKEFSNWKTLCNCHDISIFFADPGTPSQRGLNEHSNGILR
    USA300_FPR3757  LHSMFSSLPSHIFKSITFDCGKEFSNWKTLCNCHDISIFFADPGTPSQRGLNEHSNGILR
                    ************************************************************

    COL             RSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIEDDKLVQLNLTI
    NCTC8325        RSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIEDDKLVQLNLTI
    Newman          RSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIEDDKLVQLNLTI
    USA300_FPR3757  RSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIEDDKLVQLNLTI
                    **********************************************************