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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006486000
- symbol?: noc
- synonym:
- description?: nucleoid occlusion protein
- nucleoid occlusion protein
- chromosome partioning ParB family protein
- ParB family chromosome partioning protein
- ParB family chromosome partioning protein, putative
- ParB family chromosome partioning protein ParB family
- protein yyaA
- Chromosome (plasmid) partitioning protein ParB
- chromosome (plasmid) partitioning protein ParB/ Stage 0 sporulation protein J
- chromosome partioning protein, ParB family
- DNA-binding protein Spo0j-like protein
- ParB family nucleoid occlusion protein, Noc
- ParB family partitioning protein
- parB-like partition protein
- putative DNA-binding protein
- stage 0 DNA-binding protein
- transcriptional regulator
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6520447..6521286
- synteny block?: BlockID0051930
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2648 (parB)
08BA02176:
C248_2774
11819-97:
MS7_2713 (noc)
6850:
RSAU_002557
71193:
ST398NM01_2754
ECT-R 2:
ECTR2_2560
ED133:
SAOV_2750c
ED98:
SAAV_2780
HO 5096 0412:
SAEMRSA15_26070
JH1:
SaurJH1_2788
JH9:
SaurJH9_2731
JKD6008:
SAA6008_02770 (noc)
JKD6159:
SAA6159_02602 (noc)
LGA251:
SARLGA251_24730 (yyaA)
M013:
M013TW_2695
MRSA252:
SAR2795
MSHR1132:
SAMSHR1132_25360
MSSA476:
SAS2591
Mu3:
SAHV_2693
Mu50:
SAV2709
MW2:
MW2627
RF122:
SAB2585c
ST398:
SAPIG2754
T0131:
SAT0131_02991
TCH60:
HMPREF0772_10473
TW20:
SATW20_28470 (yyaA)
USA300_TCH1516:
USA300HOU_2712
VC40:
SAVC_12435
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESI
N315 MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESI
NCTC8325 MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESI
Newman MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESI
USA300_FPR3757 MKKPFSKLFGLKNKDDIIGHIEEDRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESI
************************************************************
COL HEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENI
N315 HEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENI
NCTC8325 HEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENI
Newman HEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENI
USA300_FPR3757 HEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENI
************************************************************
COL QRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGK
N315 QRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGK
NCTC8325 QRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGK
Newman QRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGK
USA300_FPR3757 QRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGK
************************************************************
COL ITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFAQDVTQ
N315 ITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFAQDVTQ
NCTC8325 ITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFAQDVTQ
Newman ITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFAQDVTQ
USA300_FPR3757 ITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFAQDVTQ
************************************************************
COL ARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
N315 ARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
NCTC8325 ARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
Newman ARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
USA300_FPR3757 ARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
***************************************