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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0071 [new locus tag: SAUSA300_RS00360 ]
  • pan locus tag?: SAUPAN000819000
  • symbol: SAUSA300_0071
  • pan gene symbol?:
  • synonym:
  • product: ISSep1-like transposase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_0071 [new locus tag: SAUSA300_RS00360 ]
  • symbol: SAUSA300_0071
  • product: ISSep1-like transposase
  • replicon: chromosome
  • strand: +
  • coordinates: 78432..79445
  • length: 1014
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGAACGATTTTGTTGTGTAAATCAAATTAACTATATTCAAATGAATCCGTTAGAAGCC
    AAATTTAAAACGAGCGCTCTAAGATCATGGAAAACTGATCAGGCAGATGCTCATAAGCTT
    GCTTGTTTAGGACCGACGCTCAAACAAACAGGCAGCTTACCTATACATGAGTTAATATTC
    TTTGAATTAAGAGAACGTGCCCGTTTTCATCTAGAAATCGAGAATGAACAAAATCGACTT
    AAATTTCAGATTCTTGAATTACTCCATCAAACATTCCCTGGTTTAGAAAGATTATTTAGT
    AGTCGATATTCAATCATTGCACTCAACATCGCAGAAATTTTTACTCATCCAGACGTGGTT
    CTTGATATCGACAAGGATGTACTTATTACACATATATTCAATTCTACAGATAAGGGAATG
    TCAATGGATAAAGCTACAAAATATGCACTTCAATTAAGAGTGATTGCTCAAGAAAGCTAT
    CCTAATGTCGATAGACATTCCTTTCTAGTCGAAAAATTACGCTTACTTATTCAACAATTA
    AAACAATCTATTCATCATCTCAAACAATTAGATGATGCCATGATTCAATTAGCACAACAA
    CTCGATTATTTTGAAAATATTCATTCGATACCTGGTATTGGTAAGCTAAGCACAGCTATG
    ATTATTGGGGAGATTGGTGATATTAAGCGATTTAAATCAAATAAACAACTCAACGCTTTT
    GTAGGCATTGATATCAAACGATATCAATCAGGTCATACACACTGTAGAGATACCATCAAC
    AAGCGTGGTAATAAAAAAGCGAGAAAACTTTTATTTTGGGTGATTATGAATATAATAAGA
    GGGCAGCATCATTATGACAATCATGTCGTCGATTATTACTACAAACTAAGAAAGCAGCCT
    AATGAGAAACCTCATAAGACTGCCATCATTGCTTGTATAAATCGATTATTAAAAACGATT
    CATTATCTGGTAATGAATCATAAATTGTACGATTATCAAATGTCACCACATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1014

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_0071 [new locus tag: SAUSA300_RS00360 ]
  • symbol: SAUSA300_0071
  • description: ISSep1-like transposase
  • length: 337
  • theoretical pI: 9.82964
  • theoretical MW: 39540.7
  • GRAVY: -0.359941

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Mobile element protein 
  • PFAM:
    HHH (CL0198) Transposase_20; Transposase IS116/IS110/IS902 family (PF02371; HMM-score: 76.3)
    no clan definedDEDD_Tnp_IS110; Transposase (PF01548; HMM-score: 33.8)
    Hepatitis_core; Hepatitis core antigen (PF00906; HMM-score: 15.6)
    DUF3677; Protein of unknown function (DUF3677) (PF12432; HMM-score: 15.3)
    DUF5340; Family of unknown function (DUF5340) (PF17275; HMM-score: 12.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.292
    • Ymax_pos: 21
    • Cmax: 0.364
    • Cmax_pos: 21
    • Smax: 0.313
    • Smax_pos: 20
    • Smean: 0.18
    • D: 0.248
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTGSLPIHELIFFELRERARFHLEIENEQNRLKFQILELLHQTFPGLERLFSSRYSIIALNIAEIFTHPDVVLDIDKDVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]