From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1961 [new locus tag: SAUSA300_RS10755 ]
  • pan locus tag?: SAUPAN001398000
  • symbol: SAUSA300_1961
  • pan gene symbol?:
  • synonym:
  • product: phiPVL ORF41-like protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_1961 [new locus tag: SAUSA300_RS10755 ]
  • symbol: SAUSA300_1961
  • product: phiPVL ORF41-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2117652..2119607
  • length: 1956
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    ATGAGGAAGGATATGAAAATAAATAAATTAACAATATCGAACTTTGCCGGAATCAAAGAA
    GAAAAATTTAATTTTGACGGTAAAGATGCAAAAATATACGGCAATAATGCGACTGGTAAG
    ACTACAACAGCAACCGCATTACAATGGTTGCTTTTCGATAAAGGTTTGGACGGTTCAACC
    AAATCATTTAACCCTGTACCTTTAAACGAAAAAAACGAAGAAAATTATGAGTTAATTCCG
    ACTGTTTTCGCAGAATTTGAAATCGACGGAAAAATTACGACTTTTAAAAAAGAGTCACAT
    CCTAAATACACAATAAATCAAAAGACGAATCGCAAGGAATACTCACGAAGTCGAACGAAG
    AAACAATATATCAATGATGAATCAATAAAAGTAAAGGATTATAAAGCTCGTATTGATGAA
    CTTATTGATGAAGATGTATTCAAGTTAATTACGAACCCTCAAGCATTTAACTTACTAGAT
    TGGAAGAAGCGAAGAAGTTTGTTGTTTGAAATTGCTAAACCAATCAATGATGAGGATGTC
    ATTAAAACAAATGATGATTTTAAAGAACTAAATAATATTCTTGGAGATCATGAAATTGAA
    ACAAAGAAAAAGATTCTTACGGACAAGATAAAACAGATTAACAAAGATATCAAAGATATT
    CCGATACGTATTAACCAAACACAACAAAATAAGCAGGATGTACCAGAATTCGATAATGAT
    AGATACGCAATTATCAAACAAGAAATTGAGCAACTTGAAAATGAGCGTATAGATATTCAA
    AACGGTAAGGAAGAAATTAATTTACGTAATCAATTAGCTGATAAACAATCAGAATTGAAA
    CGCATAGAAGACAATAACAGCGCAAGTAATGAGAACAAAATCCATGCTTTAACAAATGAA
    TTACACGTTGAAAATGGAACGGTAGCAAACCTTAAAACGAGATTAAAGCAAAACAAACAA
    CAAATCACGCATGAAGAAAATAGACGTAATCAATTATTAGAAAATCATAAAGGATTAAAA
    AGTGATTTAGAAAAAGCTAAAAATCAAAAATTTGAATATCTTGATGACAATGTATGTAGT
    TGTTGTGGTCAAAAGTTACCAGTTGAACAAGTGGATATGGCAAGAGAAAAAGCATTGCAG
    AAATTCAATGCTAGCAAATCGAAAGAATTAGAAACAATACAAACATCTATCAATCACATT
    ATTTCAGAAGGCAAGAAAATAAAGCTAATCATCGAGAAGTTAGAGGATGACAATAATAAT
    CTTCAAATTAAAATCAACGAAGCAGAAGAGCGTTCAGCAAGAATACAAAACAAAATTAAT
    AAGTTGAAAACAACTCACGTTGACGTTACGCAAACTGACGAATACAAAGCAGTAATGTTA
    GAGATAAATGAGATTAATCAAAAACGCTCTAACATCAGGAAAACTATTCAAGATAAAGTT
    TCAGGAATAGATGACAAAATAAGCGAACTTACTCAAGAAAAATCAGAAATTGAAGTGTCA
    AGATCAATCGAAAAATCAAATAAACATCTAGATGATGTTATTTCTGAATTAAGAAATGAA
    GAAGACAGATTATTGGATGAAAAAGAAAAGTATTCACATGACCTTTATATCTTAAAAGAA
    TTTACAACAACAAAAGTCAAAATGCTTACTGAAAACATCAATAATGAATTTGAAATTGCT
    GAATTTAAGCTATTCAATACCTTAGTTAACGGCGAATTAGAAGAAACATGTTCCACAACG
    GTTAACGGCGTCGAATACGACAGCGGTTTAAATAACGCCTCAAGAATTAATGTTGGCTTA
    GATATCATCAATACACTGTCAAAACATTTTAAAGTTACAGCGCCAATATTTATTGATAAT
    GCTGAATCAGTAACAGAGCTTATCAAAACAGAATCACAACAAATTCAATTGATAGTAAAT
    GAACAAGATAAAAAATTAAGAATGGAGACTATATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1956

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_1961 [new locus tag: SAUSA300_RS10755 ]
  • symbol: SAUSA300_1961
  • description: phiPVL ORF41-like protein
  • length: 651
  • theoretical pI: 5.69722
  • theoretical MW: 75608.7
  • GRAVY: -0.892166

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesCell divisionchromosome segregation protein SMC (TIGR02168; HMM-score: 14.7)
    Genetic information processingDNA metabolismChromosome-associated proteinschromosome segregation protein SMC (TIGR02168; HMM-score: 14.7)
    Cellular processesCellular processesCell divisionchromosome segregation protein SMC (TIGR02169; HMM-score: 8.1)
    Genetic information processingDNA metabolismChromosome-associated proteinschromosome segregation protein SMC (TIGR02169; HMM-score: 8.1)
  • TheSEED:  
    ATPase involved in DNA repair, phage associated 
  • PFAM:
    P-loop_NTPase (CL0023) AAA_23; AAA domain (PF13476; HMM-score: 26.9)
    AAA_27; AAA domain (PF13514; HMM-score: 22.6)
    no clan definedDUF3568; Protein of unknown function (DUF3568) (PF12092; HMM-score: 18.4)
    P-loop_NTPase (CL0023) SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 18.2)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 14.6)
    MukB; MukB N-terminal (PF04310; HMM-score: 12.1)
    Reo_sigma (CL0326) Reo_sigmaC; Reovirus sigma C capsid protein (PF04582; HMM-score: 9.9)
    no clan definedDUF5347; Family of unknown function (DUF5347) (PF17282; HMM-score: 9.1)
    P-loop_NTPase (CL0023) AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 6.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.183
    • Ymax_pos: 11
    • Cmax: 0.112
    • Cmax_pos: 22
    • Smax: 0.532
    • Smax_pos: 1
    • Smean: 0.301
    • D: 0.229
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MRKDMKINKLTISNFAGIKEEKFNFDGKDAKIYGNNATGKTTTATALQWLLFDKGLDGSTKSFNPVPLNEKNEENYELIPTVFAEFEIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQYINDESIKVKDYKARIDELIDEDVFKLITNPQAFNLLDWKKRRSLLFEIAKPINDEDVIKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDNDRYAIIKQEIEQLENERIDIQNGKEEINLRNQLADKQSELKRIEDNNSASNENKIHALTNELHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNVCSCCGQKLPVEQVDMAREKALQKFNASKSKELETIQTSINHIISEGKKIKLIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVTQTDEYKAVMLEINEINQKRSNIRKTIQDKVSGIDDKISELTQEKSEIEVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKEFTTTKVKMLTENINNEFEIAEFKLFNTLVNGELEETCSTTVNGVEYDSGLNNASRINVGLDIINTLSKHFKVTAPIFIDNAESVTELIKTESQQIQLIVNEQDKKLRMETI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]