NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS00215 [old locus tag: SAUSA300_0040 ]
• pan locus tag^?: SAUPAN000499000
• symbol: SAUSA300_RS00215
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS00215 [old locus tag: SAUSA300_0040 ]
• symbol: SAUSA300_RS00215
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 50912..51202
• length: 291
• essential: unknown

⊟Accession numbers

• Location: NC_007793 (50912..51202) NCBI
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  
  ATGAATAAGAAATCTAAGCAGCAAGAAAAGCTTTATAATTTTATAATTGCTAAATCTTTT
  CAACAACCAGTTGGAAGTACGTTCACTTATGGTGAATTAAGAAAGAAATATAATGTGGTT
  TGTAGCACGAATGATCAACGTGAAGTAGGACGTCGTTTTGCTTACTGGATTAAGTACACG
  CCAGGATTACCATTTAAAATTGTAGGAACAAAAAATGGCAGTTTATTATATCAGAAAATA
  GGGATAAACCCATGCAATAATAGCACGCCTTCGAAAGGAGGTGATTGCTAA
  60
  120
  180
  240
  291
  

⊟Protein

⊟General

• locus tag: SAUSA300_RS00215 [old locus tag: SAUSA300_0040 ]
• symbol: SAUSA300_RS00215
• description: hypothetical protein
• length: 96
• theoretical pI: 10.3555
• theoretical MW: 10919.5
• GRAVY: -0.702083

⊟Function

• reaction:
• TIGRFAM:
• TheSEED:
• PFAM:
  no clan definedDUF1413; Domain of unknown function (DUF1413) (PF07205; HMM-score: 16.8)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Extracellular
  • Cytoplasmic Score: 0.24
  • Cytoplasmic Membrane Score: 0.05
  • Cellwall Score: 0.8
  • Extracellular Score: 8.91
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.164
  • Ymax_pos: 12
  • Cmax: 0.115
  • Cmax_pos: 27
  • Smax: 0.308
  • Smax_pos: 3
  • Smean: 0.266
  • D: 0.204
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446959182 NCBI
• RefSeq: WP_001036438 NCBI
• UniProt:

⊟Protein sequence

• MNKKSKQQEKLYNFIIAKSFQQPVGSTFTYGELRKKYNVVCSTNDQREVGRRFAYWIKYTPGLPFKIVGTKNGSLLYQKIGINPCNNSTPSKGGDC

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SAUSA300_RS00215 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

You are kindly invited to share additional interesting facts.