NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS03150 [old locus tag: SAUSA300_0587 ]
- pan locus tag?: SAUPAN002444000
- symbol: SAUSA300_RS03150
- pan gene symbol?: —
- synonym:
- product: DUF443 domain-containing protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS03150 [old locus tag: SAUSA300_0587 ]
- symbol: SAUSA300_RS03150
- product: DUF443 domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 660995..661630
- length: 636
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (660995..661630) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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601TTGCTATGTGAATCTAAAGTTATCAACAAAAATCCTAAGTATAGAGTTATTAAATATGGT
GATGAATATTTAATGATTGATTTAGTAAGTACCTGGTTAACTTTATTTCTTCCTATGATT
AATTGGTTAATTCCAAAAAAATATGTCAAAATCAGTAAAAAAGAATTTGACGATTTAAAC
ATTGTCAAACCTGTTAAAAATAAAGCTTTTTGGCCAGTTGCAGGTAGTACTATTTTGTTC
GGAGTTACGTTTAGAAAATATATTCCTTCACTTAATATTCAATTAGAGAAAAACATGGTG
ATTGTAATATGTTGTGCAATATTTCTGGGTGTTTTAATACTTTTTTTATTTCTGAATCGT
AAGCTAAGGTTGGAAATTTATAATAATAACTCTAGTAAAGGGAAAATAATTTTATTTCCT
TCATTAAAAAACTTTTGTTTCACAATATTTTATTATTTTTTATTTGGCGGTCTTTCAATA
ATGGCTCTAAGTATGTTATTAACTTTAAATCCTCAAAATATAATAGGCTTTATTGGTTGG
TTGGTAATGACTGCAGGTTTCTTTCTGTTAAACATGTCATCGATTATTGACAAAAAAATT
TATGTATTATCTAAAACTAACACGGTGGAAAAATGA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS03150 [old locus tag: SAUSA300_0587 ]
- symbol: SAUSA300_RS03150
- description: DUF443 domain-containing protein
- length: 211
- theoretical pI: 10.2473
- theoretical MW: 24428.5
- GRAVY: 0.535545
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: tandem five-TM protein (TIGR01218; HMM-score: 174.8)
- TheSEED:
- PFAM: no clan definedDUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 223.4)DUF5357; Family of unknown function (DUF5357) (PF17310; HMM-score: 16.2)LtrA; Bacterial low temperature requirement A protein (LtrA) (PF06772; HMM-score: 14.1)Baculo_11_kDa; Baculovirus 11 kDa family (PF06143; HMM-score: 12.9)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.119
- Ymax_pos: 11
- Cmax: 0.11
- Cmax_pos: 52
- Smax: 0.182
- Smax_pos: 3
- Smean: 0.141
- D: 0.128
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MLCESKVINKNPKYRVIKYGDEYLMIDLVSTWLTLFLPMINWLIPKKYVKISKKEFDDLNIVKPVKNKAFWPVAGSTILFGVTFRKYIPSLNIQLEKNMVIVICCAIFLGVLILFLFLNRKLRLEIYNNNSSKGKIILFPSLKNFCFTIFYYFLFGGLSIMALSMLLTLNPQNIIGFIGWLVMTAGFFLLNMSSIIDKKIYVLSKTNTVEK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS03150 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]