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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS04380 [old locus tag: SAUSA300_0812 ]
  • pan locus tag?: SAUPAN002868000
  • symbol: SAUSA300_RS04380
  • pan gene symbol?:
  • synonym:
  • product: phage capsid protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_RS04380 [old locus tag: SAUSA300_0812 ]
  • symbol: SAUSA300_RS04380
  • product: phage capsid protein
  • replicon: chromosome
  • strand: +
  • coordinates: 891210..892268
  • length: 1059
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_007793 (891210..892268) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAAAGAGTTTAAAGAACAATTTGGGTATCAACTATCTAACTTTGATGATATGGATATT
    AAAGGATATGCCAATCTATATCAAAAGGATATAGGTAAAGATGTAAGTATGATTGAACAG
    GGGTTAAAGCAATTAAGTATTACTGAAACAGAAGTTTTATTACCAGAGCAAATTAACAAA
    AAATTATTAGGAGTGTTAAATATGAATGAAGTAAATCAATCAAGTAATACATGGGTAGGT
    ACCTTAACAAAACAATTAGTTAGTAGTGAGAATAACTTTAATATTCAAGAGTTACCAACT
    GCACGTAAAGAAGTATTTAAAGAGTTATTGGTGAATTGTGAGCTACCTCAATCACTACGT
    GAGGTGATTACCATTACTGATGATGAACATGTTGAATCTATACCATCACTAACATACATT
    AAAGATAAGTTAGCTACTAACGGTATTGAGCTATCACTTAATGGCAGTAGTAAATACTTT
    GATAGACGTGAGGGACATATCTACACAGAAGTATCAGACAGTGTAGTTCATGGCTCTGAT
    AGAACATTAGATGATCTACTTAAAGAGATATTTATTAATGAGTGTGTCGCATATGAAACA
    ACATTGTTATTAGATAAGAATAATTCAAGTGGTTTAATTGATAAAGGTAACCAAGACTTA
    TCACTTTATAATCAAGGTATCAAAGAAGTAAGTAACACATCAATATACGATGGTATCAAG
    CAAGCGATGAAAGATATACCACAAACGTTTAGGCGTAATGTATCTATTGTGATGAACACA
    GAACATCATGATAAGCTCATCAAAGAGTTGGCACAGATGGGATTAGGTGGACTTGCAGGT
    GATTTAAGTAACCTATTTAATGTGACTAATGTAGTGGTTACTGATGATGCACATGATGTC
    TTTGTTGGAGACTTTGGACATGCCATATATGCTAAATACGAACCTATTATGTATAACAAA
    AAGAAACAAGCATTAAAAGGTATTTATCAATTTGCATTGAACTATGTGTTTGATATAAAA
    ATAATTCCAGAGTTATTGCGCATAGTTAATATTAAATAA
    60
    120
    180
    240
    300
    360
    420
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    540
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    660
    720
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    840
    900
    960
    1020
    1059

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_RS04380 [old locus tag: SAUSA300_0812 ]
  • symbol: SAUSA300_RS04380
  • description: phage capsid protein
  • length: 352
  • theoretical pI: 4.80289
  • theoretical MW: 39905.1
  • GRAVY: -0.319602

Function[edit source | edit]

  • TIGRFAM:
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage major capsid protein, HK97 family (TIGR01554; HMM-score: 12.5)
  • TheSEED:
  • PFAM:
    HTH (CL0123) UPF0122; Putative helix-turn-helix protein, YlxM / p13 like (PF04297; HMM-score: 13.6)
    Phage-coat (CL0373) Phage_capsid; Phage capsid family (PF05065; HMM-score: 13.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.104
    • Ymax_pos: 69
    • Cmax: 0.102
    • Cmax_pos: 34
    • Smax: 0.124
    • Smax_pos: 60
    • Smean: 0.075
    • D: 0.092
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446580192 NCBI
  • RefSeq: WP_000657538 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKEFKEQFGYQLSNFDDMDIKGYANLYQKDIGKDVSMIEQGLKQLSITETEVLLPEQINKKLLGVLNMNEVNQSSNTWVGTLTKQLVSSENNFNIQELPTARKEVFKELLVNCELPQSLREVITITDDEHVESIPSLTYIKDKLATNGIELSLNGSSKYFDRREGHIYTEVSDSVVHGSDRTLDDLLKEIFINECVAYETTLLLDKNNSSGLIDKGNQDLSLYNQGIKEVSNTSIYDGIKQAMKDIPQTFRRNVSIVMNTEHHDKLIKELAQMGLGGLAGDLSNLFNVTNVVVTDDAHDVFVGDFGHAIYAKYEPIMYNKKKQALKGIYQFALNYVFDIKIIPELLRIVNIK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SAUSA300_RS04380 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]