NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS08110 [old locus tag: SAUSA300_1486 ]
• pan locus tag^?: SAUPAN004100000
• symbol: SAUSA300_RS08110
• pan gene symbol^?: —
• synonym:
• product: conjugal transfer protein

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS08110 [old locus tag: SAUSA300_1486 ]
• symbol: SAUSA300_RS08110
• product: conjugal transfer protein
• replicon: chromosome
• strand: -
• coordinates: 1640570..1641625
• length: 1056
• essential: unknown

⊟Accession numbers

• Location: NC_007793 (1640570..1641625) NCBI
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
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  481
  541
  601
  661
  721
  781
  841
  901
  961
  1021
  
  ATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGAT
  ATTCCTAAAGAACAACGCCGAGTAATTCCAAAATTTAAAAATCGTCGTAAGATGATTGTA
  ATTTGTTTTTACTCATTATTAGCTATTTTGTTAATTCTTTTATTAGCTTCTTTTATTAAA
  GCTACAAGAGCAAATAATGACAGTAAAGAAGCAGTTAATAAAACGAATATGATTCAAAAA
  AAGTATGAAGATAATGCGAATACAGTTCAGTATAGTCCTAAATTAAAGTTATATGCTGAT
  AAGTTTATTGATACGTATATGAATATCTCGAAAGATTCAAAAGAATTGGAATCTAGAGAA
  AAAGAATTGTTGAAATATTTTCCATCAGATTATAAAAAACCTGATGAAAAAATTTCAGAT
  ACAGAACGAAAATTGAATAGTAAAGAATTTTATAATATTAAACGTAAAGATAAACAAACA
  ATTATACAGTATATTGTTAATTATGATGTGAATATTACTGAAAAGAAAGAAGTTAAAGTT
  AAGAAGAAAAAGAAAAGTGAAAAAGATAAAGATGAGTATGAAACAAAAACAGAAGAAAAG
  CAACGTAAAGTAAATCAAAACATTTTAATAAATATACCTATTAAGAGTGAAAATAATAAG
  TATGTTGTTGTTGAATATCCTTATTTTACGCCAATCCCTGATAGTCAATTGAATCAAGCT
  AAAATGGTTGAGGATAATTTGAAAGACAATAAACGGGAAGACAATCCGAAAGCAAAAGCT
  TTTATTGAAGATTTCTTTAATAAATATGCTTCTAGTAAGTCTGATGATATGGCCTATTTA
  ATGGATAACCCTGAGGGCTTAGAAGGAACTAGAGAAGTTTCTCAGATAAGAGAAATTAGG
  TTATATCCAAAAGGCGATGATTATGTTGCTAAAGTTGAAATTTTGATGAAAGATAAAGAT
  TCTCCTTTGGAGAATTTGGAGCATTACACATTAGATATAACAAAAAAAGATGGTAAATAT
  TACGTTAAAAATATGACTAATTCTATTGGAGGTTAA
  60
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  1056
  

⊟Protein

⊟General

• locus tag: SAUSA300_RS08110 [old locus tag: SAUSA300_1486 ]
• symbol: SAUSA300_RS08110
• description: conjugal transfer protein
• length: 351
• theoretical pI: 9.86217
• theoretical MW: 41493.4
• GRAVY: -0.929915

⊟Function

• TIGRFAM:
• TheSEED:
• PFAM:
  NTF2 (CL0051) TpcC; Conjugative transposon protein TcpC (PF12642; HMM-score: 113.2)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helix: 1
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.207
  • Ymax_pos: 67
  • Cmax: 0.192
  • Cmax_pos: 67
  • Smax: 0.341
  • Smax_pos: 52
  • Smean: 0.182
  • D: 0.197
• predicted transmembrane helices (TMHMM): 1

⊟Accession numbers

• GI: 446614657 NCBI
• RefSeq: WP_000692003 NCBI
• UniProt:

⊟Protein sequence

• MKIISKYILTRFSKNGKHFDIPKEQRRVIPKFKNRRKMIVICFYSLLAILLILLLASFIKATRANNDSKEAVNKTNMIQKKYEDNANTVQYSPKLKLYADKFIDTYMNISKDSKELESREKELLKYFPSDYKKPDEKISDTERKLNSKEFYNIKRKDKQTIIQYIVNYDVNITEKKEVKVKKKKKSEKDKDEYETKTEEKQRKVNQNILINIPIKSENNKYVVVEYPYFTPIPDSQLNQAKMVEDNLKDNKREDNPKAKAFIEDFFNKYASSKSDDMAYLMDNPEGLEGTREVSQIREIRLYPKGDDYVAKVEILMKDKDSPLENLEHYTLDITKKDGKYYVKNMTNSIGG

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SAUSA300_RS08110 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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