Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS08110 [old locus tag: SAUSA300_1486 ]
- pan locus tag?: SAUPAN004100000
- symbol: SAUSA300_RS08110
- pan gene symbol?: —
- synonym:
- product: conjugal transfer protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS08110 [old locus tag: SAUSA300_1486 ]
- symbol: SAUSA300_RS08110
- product: conjugal transfer protein
- replicon: chromosome
- strand: -
- coordinates: 1640570..1641625
- length: 1056
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (1640570..1641625) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1021ATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGAT
ATTCCTAAAGAACAACGCCGAGTAATTCCAAAATTTAAAAATCGTCGTAAGATGATTGTA
ATTTGTTTTTACTCATTATTAGCTATTTTGTTAATTCTTTTATTAGCTTCTTTTATTAAA
GCTACAAGAGCAAATAATGACAGTAAAGAAGCAGTTAATAAAACGAATATGATTCAAAAA
AAGTATGAAGATAATGCGAATACAGTTCAGTATAGTCCTAAATTAAAGTTATATGCTGAT
AAGTTTATTGATACGTATATGAATATCTCGAAAGATTCAAAAGAATTGGAATCTAGAGAA
AAAGAATTGTTGAAATATTTTCCATCAGATTATAAAAAACCTGATGAAAAAATTTCAGAT
ACAGAACGAAAATTGAATAGTAAAGAATTTTATAATATTAAACGTAAAGATAAACAAACA
ATTATACAGTATATTGTTAATTATGATGTGAATATTACTGAAAAGAAAGAAGTTAAAGTT
AAGAAGAAAAAGAAAAGTGAAAAAGATAAAGATGAGTATGAAACAAAAACAGAAGAAAAG
CAACGTAAAGTAAATCAAAACATTTTAATAAATATACCTATTAAGAGTGAAAATAATAAG
TATGTTGTTGTTGAATATCCTTATTTTACGCCAATCCCTGATAGTCAATTGAATCAAGCT
AAAATGGTTGAGGATAATTTGAAAGACAATAAACGGGAAGACAATCCGAAAGCAAAAGCT
TTTATTGAAGATTTCTTTAATAAATATGCTTCTAGTAAGTCTGATGATATGGCCTATTTA
ATGGATAACCCTGAGGGCTTAGAAGGAACTAGAGAAGTTTCTCAGATAAGAGAAATTAGG
TTATATCCAAAAGGCGATGATTATGTTGCTAAAGTTGAAATTTTGATGAAAGATAAAGAT
TCTCCTTTGGAGAATTTGGAGCATTACACATTAGATATAACAAAAAAAGATGGTAAATAT
TACGTTAAAAATATGACTAATTCTATTGGAGGTTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS08110 [old locus tag: SAUSA300_1486 ]
- symbol: SAUSA300_RS08110
- description: conjugal transfer protein
- length: 351
- theoretical pI: 9.86217
- theoretical MW: 41493.4
- GRAVY: -0.929915
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: NTF2 (CL0051) TpcC; Conjugative transposon protein TcpC (PF12642; HMM-score: 113.2)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.207
- Ymax_pos: 67
- Cmax: 0.192
- Cmax_pos: 67
- Smax: 0.341
- Smax_pos: 52
- Smean: 0.182
- D: 0.197
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKIISKYILTRFSKNGKHFDIPKEQRRVIPKFKNRRKMIVICFYSLLAILLILLLASFIKATRANNDSKEAVNKTNMIQKKYEDNANTVQYSPKLKLYADKFIDTYMNISKDSKELESREKELLKYFPSDYKKPDEKISDTERKLNSKEFYNIKRKDKQTIIQYIVNYDVNITEKKEVKVKKKKKSEKDKDEYETKTEEKQRKVNQNILINIPIKSENNKYVVVEYPYFTPIPDSQLNQAKMVEDNLKDNKREDNPKAKAFIEDFFNKYASSKSDDMAYLMDNPEGLEGTREVSQIREIRLYPKGDDYVAKVEILMKDKDSPLENLEHYTLDITKKDGKYYVKNMTNSIGG
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS08110 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]