NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS10675 [old locus tag: SAUSA300_1946 ]
- pan locus tag?: SAUPAN001382000
- symbol: SAUSA300_RS10675
- pan gene symbol?: —
- synonym:
- product: transcriptional activator RinB
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS10675 [old locus tag: SAUSA300_1946 ]
- symbol: SAUSA300_RS10675
- product: transcriptional activator RinB
- replicon: chromosome
- strand: -
- coordinates: 2110992..2111141
- length: 150
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (2110992..2111141) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
61
121ATGATTAAGCAAATACTAAGATTATTATTCTTACTAGCGATGTATGAGTTAGGTAAGTAT
GTAACTGAGCAAGTATATATTATGATGACGGCTAATGATGATGTAGAGGCGCCGAGTGAT
TACGTCTTTCGAGCGGAGGTAAGTGAGTGA60
120
150
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS10675 [old locus tag: SAUSA300_1946 ]
- symbol: SAUSA300_RS10675
- description: transcriptional activator RinB
- length: 49
- theoretical pI: 4.07995
- theoretical MW: 5748.7
- GRAVY: 0.24898
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: no clan definedRinB; Transcriptional activator RinB (PF06116; HMM-score: 86)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.146
- Ymax_pos: 11
- Cmax: 0.11
- Cmax_pos: 45
- Smax: 0.256
- Smax_pos: 1
- Smean: 0.209
- D: 0.171
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MIKQILRLLFLLAMYELGKYVTEQVYIMMTANDDVEAPSDYVFRAEVSE
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS10675 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]