Due to technical reasons this service will not be available for 7 days from 27 Nov to 04 Dec 2017
From AureoWiki
Jump to: navigation, search
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS08525 [old locus tag: SA1514 ]
  • pan locus tag?: SAUPAN004314000
  • symbol: SA_RS08525
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS08525 [old locus tag: SA1514 ]
  • symbol: SA_RS08525
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1725021..1726508
  • length: 1488
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (1725021..1726508) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    GTGAAAACAATTCAATTACACAAGACAACTTTGATATTAATTGCGATATTATTGTTTTAT
    ACTTTTATGGGTATCTTACTACCAATCATGCACGATGATTTACAATGGTTTAGCAATTAT
    AATACTGATATTTTAAAAGTAGGATTTGCATCACTTAATGGTCGCTATATCGGAAATATC
    TTTGAAATTATAGCTGTACATGTAAGCTGGTTACGTTGGCTTTCATATGGTCTCATTAGT
    ATGGGCATCATTTGGATGATTATGCACATTACACGTTGTAAAGCGTGGACAAGCTATTAT
    TTGTTAGCATTTTCTTTAATGTTAATTTTACCAAGTGCTATTTATGCAGATACATATGGC
    TGGTTTGCAGGATTTTATAATTATGCGACATCAACACTAATTTCACTCTTTATTATTTAT
    TATTGTATTAATGCAATTATATATAAAGAAAAGCAGCCGGTAAGTGTTACTGTACTATTC
    TATGTTTTATGCTTCTTCGGTCAATTATTTATGGAGAATGTGACATTATTCCACTGTATC
    ATTTTAATTTTAGCTTTTCTGTATGAATTTACTGCAAATCGAACACTTAATTATAAATTA
    TTGTTTTCATTTATGATTGCTACTATAGGTACAATCATTATGTTTTCCAATCCAAATTAT
    CGCAAAATTTTATTTGAAGGATCAGAATATCAACAAGTTTCAAATAATCAAGGTATCTTT
    TCAAAATTTGCAGAAATGATATCAACGTCACTTCCATATGGTGTCATTTTCAGTCAGATT
    ATAATTTTAAGTATGATTGCAGCGCTTATTATTTATCTACTGCTTAGAAGTGATCGGTAT
    GTACATTTAACAATATTAAAGCGTCGTATCATTATGATAGGATTTATCACTTTACCGCTT
    TATTATTTACTATTTTACAATCAGTTTTTATTAAATAAAAATACAGATATTGGATTGGTT
    GGTTTTGTGAACGTAATTGTATGTGGTTACTTTGCGTTTTCGATATTTGTAGGTATTTAT
    TTGTCTATTAATGATCGTAAAACACAAATCACTTTATATTCCTTACTTATTGCAATATGT
    GTTTCGGCGTCGACACTAGTCATTGTTACTCCAATAGAACCAGGTAATTTTTTGATTGTT
    TATACGATACATGTAATCATTTTAATTATTTTATTAAAAGAATTTCGGAAATATAAGTCA
    ATCAATGTTAATTTTATTAAAGGTGCATCACTAGTTTTAGCTGTGATATATCTTAGTGCA
    TTTATTTATGTTCATTATGAACATGAAAAAAGAGTTCAGTTATTAAAACAACAAATTAAA
    GATCATCCACGACAAGAGGTTTATACAGTGGAATCATTGCCGTTTGAACATTATATGCAT
    CATCCGTCACCAATCAATAAAAATTACCAAGAGTGGTTTAATAATTATGAAGAATTACCG
    AAAATGACCAAAGTTAAATATATTCCATTTGGTTCAGACGATTCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1488

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS08525 [old locus tag: SA1514 ]
  • symbol: SA_RS08525
  • description: hypothetical protein
  • length: 495
  • theoretical pI: 9.06777
  • theoretical MW: 57696.1
  • GRAVY: 0.605657

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 13
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.169
    • Ymax_pos: 11
    • Cmax: 0.132
    • Cmax_pos: 32
    • Smax: 0.372
    • Smax_pos: 1
    • Smean: 0.267
    • D: 0.207
  • predicted transmembrane helices (TMHMM): 13

Accession numbers[edit source | edit]

  • GI: 446772172 NCBI
  • RefSeq: WP_000849428 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKTIQLHKTTLILIAILLFYTFMGILLPIMHDDLQWFSNYNTDILKVGFASLNGRYIGNIFEIIAVHVSWLRWLSYGLISMGIIWMIMHITRCKAWTSYYLLAFSLMLILPSAIYADTYGWFAGFYNYATSTLISLFIIYYCINAIIYKEKQPVSVTVLFYVLCFFGQLFMENVTLFHCIILILAFLYEFTANRTLNYKLLFSFMIATIGTIIMFSNPNYRKILFEGSEYQQVSNNQGIFSKFAEMISTSLPYGVIFSQIIILSMIAALIIYLLLRSDRYVHLTILKRRIIMIGFITLPLYYLLFYNQFLLNKNTDIGLVGFVNVIVCGYFAFSIFVGIYLSINDRKTQITLYSLLIAICVSASTLVIVTPIEPGNFLIVYTIHVIILIILLKEFRKYKSINVNFIKGASLVLAVIYLSAFIYVHYEHEKRVQLLKQQIKDHPRQEVYTVESLPFEHYMHHPSPINKNYQEWFNNYEELPKMTKVKYIPFGSDDS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS08525 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]