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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS09270 [old locus tag: SA1648 ]
  • pan locus tag?: SAUPAN004617000
  • symbol: SA_RS09270
  • pan gene symbol?: seo
  • synonym:
  • product: exotoxin

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS09270 [old locus tag: SA1648 ]
  • symbol: SA_RS09270
  • product: exotoxin
  • replicon: chromosome
  • strand: -
  • coordinates: 1880851..1881615
  • length: 765
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (1880851..1881615) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGTTAAATGTATTATTATTAATTTTAAATTTAATTGCAATATGTAGTGTAAACAATGCA
    TATGCAAATGAAGAAGATCCTAAAATAGAGAGTTTGTGTAAGAAGTCAAGTGTAGACCCT
    ATTGCTTTACATAATATTAATGATGATTATATAAATAATCGATTTACGACAGTAAAATCA
    ATTGTATCAACTACAGAAAAATTCTTAGACTTCGATTTATTATTTAAAAGTATTAATTGG
    TTAGATGGAATATCTGCTGAATTTAAAGATTTAAAAGTGGAATTTAGCTCATCAGCGATT
    TCTAAAGAATTTCTAGGAAAGACTGTTGATATTTATGGTGTTTACTATAAAGCACATTGT
    CATGGTGAGCATCAAGTGGATACTGCCTGTACATATGGTGGGGTAACACCTCATGAAAAT
    AATAAATTAAGCGAGCCTAAAAATATAGGAGTAGCTGTGTATAAGGATAATGTAAATGTT
    AATACATTTATCGTTACTACAGATAAAAAGAAAGTTACTGCACAAGAACTTGATATTAAA
    GTAAGAACAAAATTAAATAATGCATATAAATTGTATGACAGAATGACTAGTGATGTACAA
    AAAGGTTATATTAAATTTCATTCTCATTCGGAGCATAAAGAATCATTTTATTATGATTTA
    TTTTATATTAAAGGAAATTTACCAGATCAATATTTGCAAATTTATAATGATAATAAAACA
    ATAGATTCATCAGACTATCATATTGATGTTTATTTATTTACATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    765

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS09270 [old locus tag: SA1648 ]
  • symbol: SA_RS09270
  • description: exotoxin
  • length: 254
  • theoretical pI: 6.23429
  • theoretical MW: 29147.7
  • GRAVY: -0.355118

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    Ant-toxin_C (CL0386) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 88.7)
    OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 30.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 10
    • Internal Helix: 1
  • LocateP:
  • SignalP: Signal peptide length 23 aa
    • Ymax: 0.745
    • Ymax_pos: 23
    • Cmax: 0.777
    • Cmax_pos: 23
    • Smax: 0.793
    • Smax_pos: 15
    • Smean: 0.673
    • D: 0.717
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446858491 NCBI
  • RefSeq: WP_000935747 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MLNVLLLILNLIAICSVNNAYANEEDPKIESLCKKSSVDPIALHNINDDYINNRFTTVKSIVSTTEKFLDFDLLFKSINWLDGISAEFKDLKVEFSSSAISKEFLGKTVDIYGVYYKAHCHGEHQVDTACTYGGVTPHENNKLSEPKNIGVAVYKDNVNVNTFIVTTDKKKVTAQELDIKVRTKLNNAYKLYDRMTSDVQKGYIKFHSHSEHKESFYYDLFYIKGNLPDQYLQIYNDNKTIDSSDYHIDVYLFT

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS09270 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]