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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS10430 [old locus tag: SA1816 ]
  • pan locus tag?: SAUPAN005242000
  • symbol: SA_RS10430
  • pan gene symbol?: sel
  • synonym:
  • product: exotoxin

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS10430 [old locus tag: SA1816 ]
  • symbol: SA_RS10430
  • product: exotoxin
  • replicon: chromosome
  • strand: +
  • coordinates: 2057159..2057881
  • length: 723
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (2057159..2057881) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAAAAAAAGATTATTATTTGTAATTGTTATTACTTTATTTATTTTTTCTTCTAATCAT
    ACAGTCTTATCTAACGGCGATGTAGGTCCAGGAAATCTAAGAAATTTTTATACTAAATAT
    GAATATGTGAATTTAAAGAATGTTAAAGACAAAAATTCACCAGAATCACACCGCTTAGAA
    TACTCGTATAAAAATGATACATTGTATGCTGAATTTGACAATGAATATATAACTAGTGAT
    CTAAAGGGAAAAAATGTCGATGTTTTTGGTATAAGCTATAAATATGGTTCTAACTCTCGT
    ACTATATATGGTGGTGTTACTAAAGCAGAAAACAATAAATTAGATTCGCCAAGAATAATA
    CCTATAAATTTAATTATCAATGGCAAGCATCAAACAGTTACAACTAAAAGTGTTTCTACA
    GATAAAAAAATGGTTACCGCACAAGAAATAGATGTCAAACTAAGAAAATACTTGCAAGAT
    GAATTTAATATTTATGGACACAATGATACTGGTAAAGGTAAAGAATACGGCACTTCTTCA
    AAATTTTATAGCGGTTTTGATAAGGGGAGTGTAGTATTCCATATGAATGATGGTTCTAAT
    TTCTCGTATGATTTATTTTACACAGGATACGGTCTTCCAGAAAGCTTCTTAAAAATTTAC
    AAAGATAATAAAACTGTTGATTCAACACAATTTCATCTAGATGTCGAAATTTCAAAAAGA
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    723

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS10430 [old locus tag: SA1816 ]
  • symbol: SA_RS10430
  • description: exotoxin
  • length: 240
  • theoretical pI: 9.41784
  • theoretical MW: 27495.7
  • GRAVY: -0.618333

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    Ant-toxin_C (CL0386) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 124.2)
    OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 27.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 10
    • Internal Helix: 1
  • LocateP:
  • SignalP: Signal peptide length 25 aa
    • Ymax: 0.442
    • Ymax_pos: 25
    • Cmax: 0.243
    • Cmax_pos: 25
    • Smax: 0.928
    • Smax_pos: 14
    • Smean: 0.819
    • D: 0.589
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

  • GI: 446669253 NCBI
  • RefSeq: WP_000746599 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKKRLLFVIVITLFIFSSNHTVLSNGDVGPGNLRNFYTKYEYVNLKNVKDKNSPESHRLEYSYKNDTLYAEFDNEYITSDLKGKNVDVFGISYKYGSNSRTIYGGVTKAENNKLDSPRIIPINLIINGKHQTVTTKSVSTDKKMVTAQEIDVKLRKYLQDEFNIYGHNDTGKGKEYGTSSKFYSGFDKGSVVFHMNDGSNFSYDLFYTGYGLPESFLKIYKDNKTVDSTQFHLDVEISKR

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS10430 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]