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NCBI: 01-DEC-2025

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: EGJ38_002269 [new locus tag: EGJ38_RS11325 ]
  • pan locus tag?: SAUPAN005771000
  • symbol: EGJ38_002269
  • pan gene symbol?: —
  • synonym:
  • alternate name: JSNZ_002269
  • product: DUF4870 domain-containing protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EGJ38_002269 [new locus tag: EGJ38_RS11325 ]
  • symbol: EGJ38_002269
  • product: DUF4870 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2265785..2266207
  • length: 423
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq: MGT2424156 NCBI
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGACAACTGAAATGAACGACGTAACAAATCATCAACCGAATCGCAAATCCAATGATGAG
    AACATTATGGCGATGCTTATCTATTTATTAAGTTTATTCACATCTATTATTGGTCCACTG
    ATAATATGGTTATTGAAAAAAGATGAATCGAAACTAGTTGATCGTGCTGGAAAAAATTAT
    CTTAACTATACGATTTCTTATATTATTTGGTCTATCGTTTTAGTCGTTATCACTTTAATA
    GGCGTTTTCCTAATTGCTACAGATATTGATTTCATTATTATTATAGGTTTCATCATTACG
    TTTATCGGTATTTTATCCATATTCGCTTTCTCAATATTATCTTTTGTATTCACAATTATT
    GCGTGTGTCAAATATTATAATGGTCAAGAATATGTAATACCTTTAACAATTCGATTTATT
    TAA
    60
    120
    180
    240
    300
    360
    420
    423


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EGJ38_002269 [new locus tag: EGJ38_RS11325 ]
  • symbol: EGJ38_002269
  • description: DUF4870 domain-containing protein
  • length: 140
  • theoretical pI: 5.78375
  • theoretical MW: 16038.1
  • GRAVY: 0.928571

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF4870; Domain of unknown function (DUF4870) (PF09685; HMM-score: 87.4)
    and 6 more
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 22)
    no clan defined DUF2951; Protein of unknown function (DUF2951) (PF11166; HMM-score: 17.7)
    TSPAN_4TM-like (CL0347) Tetraspanin; Tetraspanin family (PF00335; HMM-score: 15.8)
    no clan defined DUF2207_C; Predicted membrane protein (DUF2207) C-terminal domain (PF20990; HMM-score: 14.7)
    Acyl-CoA_desat (CL0713) FA_desaturase; Fatty acid desaturase (PF00487; HMM-score: 12)
    no clan defined DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.7474
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.2524
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003729
    • TAT(Tat/SPI): 0.000334
    • LIPO(Sec/SPII): 0.001007
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: MGT2424156 NCBI
  • UniProt:

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTTEMNDVTNHQPNRKSNDENIMAMLIYLLSLFTSIIGPLIIWLLKKDESKLVDRAGKNYLNYTISYIIWSIVLVVITLIGVFLIATDIDFIIIIGFIITFIGILSIFAFSILSFVFTIIACVKYYNGQEYVIPLTIRFI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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