PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005771000
• symbol^?: —
• synonym:
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • DUF4870 domain-containing protein
• strand^?: +
• coordinates^?: 5862423..5862854
• synteny block^?: BlockID0045170
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2294
N315:
SA2096
NCTC8325:
SAOUHSC_02575
Newman:
NWMN_2202
USA300_FPR3757:
SAUSA300_2252
04-02981:
SA2981_2241
08BA02176:
C248_2342
11819-97:
MS7_2320
6850:
RSAU_002135
71193:
ST398NM01_2353
ECT-R 2:
ECTR2_2162
ED133:
SAOV_2342
ED98:
SAAV_2364
HO 5096 0412:
SAEMRSA15_22000
JH1:
SaurJH1_2369
JH9:
SaurJH9_2326
JKD6008:
SAA6008_02338
JKD6159:
SAA6159_02206
LGA251:
SARLGA251_20850
M013:
M013TW_2259
MRSA252:
SAR2387
MSHR1132:
SAMSHR1132_21270
MSSA476:
SAS2193
Mu3:
SAHV_2287
Mu50:
SAV2303
MW2:
MW2221
RF122:
SAB2175
ST398:
SAPIG2353
T0131:
SAT0131_02481
TCH60:
HMPREF0772_10895
TW20:
SATW20_24330
USA300_TCH1516:
USA300HOU_2284
VC40:
SAVC_10370

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTTEMNDVTNHQPNRKSNDENIMAMLIYLLSLFTSIIGPLIIWLLKKDESKLVDRAGKNY
  N315            MTTEMNDVTNHQPNRKSNDENIMAMLIYLLSLFTSIIGPLIIWLLKKDESKLVDRAGKNY
  NCTC8325        MTTEMNDVTNHQPNRKSNDENIMAMLIYLLSLFTSIIGPLIIWLLKKDESKLVDRAGKNY
  Newman          MTTEMNDVTNHQPNRKSNDENIMAMLIYLLSLFTSIIGPLIIWLLKKDESKLVDRAGKNY
  USA300_FPR3757  MTTEMNDVTNHQPNRKSNDENIMAMLIYLLSLFTSIIGPLIIWLLKKDESKLVDRAGKNY
                  ************************************************************
  
  COL             LNYTISYIIWSIVLVVITLIGVFLIATDIDFIIIIGFIITFIGILSIFAFSILSFVFTII
  N315            LNYTISYIIWSIVLVVITLIGVFLIATDISFIIIIGFIITFIGILSIFAFSILSFVFTII
  NCTC8325        LNYTISYIIWSIVLVVITLIGVFLIATDIDFIIIIGFIITFIGILSIFAFSILSFVFTII
  Newman          LNYTISYIIWSIVLVVITLIGVFLIATDIDFIIIIGFIITFIGILSIFAFSILSFVFTII
  USA300_FPR3757  LNYTISYIIWSIVLVVITLIGVFLIATDIDFIIIIGFIITFIGILSIFAFSILSFVFTII
                  *****************************.******************************
  
  COL             ACVKYYNGQEYIIPLTIRFI
  N315            ACVKYYNGQEYVIPLTIRFI
  NCTC8325        ACVKYYNGQEYIIPLTIRFI
  Newman          ACVKYYNGQEYIIPLTIRFI
  USA300_FPR3757  ACVKYYNGQEYIIPLTIRFI
                  ***********:********