From AureoWiki
Jump to navigation Jump to search

NCBI: 01-DEC-2025

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: EGJ38_002553 [new locus tag: EGJ38_RS12745 ]
  • pan locus tag?: SAUPAN006241000
  • symbol: EGJ38_002553
  • pan gene symbol?: —
  • synonym:
  • alternate name: JSNZ_002553
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EGJ38_002553 [new locus tag: EGJ38_RS12745 ]
  • symbol: EGJ38_002553
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2563524..2564024
  • length: 501
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq: MGT2424432 NCBI
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    GTGACAAGCATTTTTATTTTTGCGTACTTAAACAACACTTCAGGCAATATGTTGTTTAGG
    CAACAAATGATATGTGCGTGTTTATTGGCAAACGTACAACATAGTAGTATAGTATGTCTA
    AACAACACATGTTGCATAGTTGATATGCGTTGTTTAAATACTAAGATAGGAGGGATTGAC
    ATGAGCGAGACAGATGAACCTCAGGGGTTTGAACGCACGCATAATATATTTAATATTAAT
    CAGAATAGGCAGAGTCTAATGACATTCATTATAAGTAAATTGAAGTCGACGTTGAAGCAA
    CACATAATAATTGCTCGTGGTAAAAAGCGAATCGACTATCGACTGTCGTATAACTTTTAC
    ACTACGTATTATGATAATGTAGAAATCAAGAAAATCGACTGTGAATATACCTATGCTATG
    CCCATTGCAATTTTAATAAGACACACGATGTCATTCGACAATGCTCATTTCTTTGCTCAG
    TTACGTCATCCTGTCTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    501


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EGJ38_002553 [new locus tag: EGJ38_RS12745 ]
  • symbol: EGJ38_002553
  • description: hypothetical protein
  • length: 166
  • theoretical pI: 8.66569
  • theoretical MW: 19353.5
  • GRAVY: -0.0481928

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    S4 (CL0492) SYY_C-terminal; Tyrosine--tRNA ligase SYY-like C-terminal domain (PF22421; HMM-score: 14.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.1896
    • Cytoplasmic Membrane Score: 0.0618
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.7485
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.236162
    • TAT(Tat/SPI): 0.01338
    • LIPO(Sec/SPII): 0.10276
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: MGT2424432 NCBI
  • UniProt:

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTSIFIFAYLNNTSGNMLFRQQMICACLLANVQHSSIVCLNNTCCIVDMRCLNTKIGGIDMSETDEPQGFERTHNIFNINQNRQSLMTFIISKLKSTLKQHIIIARGKKRIDYRLSYNFYTTYYDNVEIKKIDCEYTYAMPIAILIRHTMSFDNAHFFAQLRHPVL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=EGJ38_002553&oldid=116479"