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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000223
- pan locus tag?: SAUPAN001189000
- symbol: JSNZ_000223
- pan gene symbol?: —
- synonym:
- product: DUF5079 family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000223
- symbol: JSNZ_000223
- product: DUF5079 family protein
- replicon: chromosome
- strand: +
- coordinates: 263376..264023
- length: 648
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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601ATGGAGATAAAGGAAATTGTAGCAAATATAAAAAGGCCGTACTTAACACCTTTTGTAATA
TTTACGATTTTGCTCTCATTGTTTTTTGATGCGATTATGTTTTTCAATAGTAAACTTTAT
GATAAGTTGCCATTATATTTAGTCGTATTTTTAATTTTTGCAATAGTAGTGTCAATTTTA
CTGTATTTACAAGAAAAAAGTGAGAAGGTAAAAGTTGAGAAAAAGAATGTGATTTTGTAT
ATGACACTAAATGTTATAACTGGTTATTCAATGCCATTATTTATTGCTTCTACTTATGTT
GTTGGTGCAGCAGTAAATGATATAGATGTGTTTTATTATTGGTGCGGAGTAGCTTTGATG
TTATTTATTTCTTGGTTAGGTTTATTTTTATTTTATAAAAATGAATTTGATAGTGAAAAT
CCTAATCCTGCAGTTAACGCCATAGCAATTATTATAAAGTTATTTGCTTTAGCAACTATA
TTTTATATAAGTAAAGTTGCGCCTAGTATTGCGGATGAAAAGAACTTTATATTTGTAAGT
ATACTAATAAATTTAGGTGTTGATGCTCTACTTGTTAGGTCATATTTTAATTACGCGTTA
TATAAGAGTATTAAGAAAGATATCGAAAATGAAGGAAAGACAATGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000223
- symbol: JSNZ_000223
- description: DUF5079 family protein
- length: 215
- theoretical pI: 8.30481
- theoretical MW: 24655.3
- GRAVY: 0.759535
⊟Function[edit | edit source]
- TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 5.6)
- TheSEED:
- PFAM: no clan defined DUF5079; Domain of unknown function (DUF5079) (PF16882; HMM-score: 200.7)and 3 morePyr4-TMTC; Pyr4-like transmembrane terpene cyclases (PF25129; HMM-score: 19)DUF1686; Protein of unknown function (DUF1686) (PF07937; HMM-score: 10)2heme_cytochrom (CL0328) DUF2231; Predicted membrane protein (DUF2231) (PF09990; HMM-score: 9.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.9489
- Cell wall & surface Score: 0
- Extracellular Score: 0.0508
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00081
- TAT(Tat/SPI): 0.000064
- LIPO(Sec/SPII): 0.00351
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MEIKEIVANIKRPYLTPFVIFTILLSLFFDAIMFFNSKLYDKLPLYLVVFLIFAIVVSILLYLQEKSEKVKVEKKNVILYMTLNVITGYSMPLFIASTYVVGAAVNDIDVFYYWCGVALMLFISWLGLFLFYKNEFDSENPNPAVNAIAIIIKLFALATIFYISKVAPSIADEKNFIFVSILINLGVDALLVRSYFNYALYKSIKKDIENEGKTM
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000222 > JSNZ_000223 > JSNZ_000224
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)