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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000222
  • pan locus tag?: SAUPAN001171000
  • symbol: JSNZ_000222
  • pan gene symbol?: —
  • synonym:
  • product: DUF5079 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000222
  • symbol: JSNZ_000222
  • product: DUF5079 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 262698..263339
  • length: 642
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGAATTGAAAGTCGATGATTTTGTAAAGAATATAAAAAGACCGTACTTAACTGTATTG
    GGAGTATTTGTAGTTGCCTATTCATTATTTTTTGATTCATTGATGTTTTTCTATGGCAAA
    CTATATGATAAATTGCCTGTATATTTGCTGGTGTTTATGGCCTTTACAGCTGTAATTTTG
    ATTATGATGTACATACAAGAGAAAAATGAGAATTACAAAGTTGAAAAAAGATATGTGGTT
    AAATATCTCACACTTAACGTTATTGTGGGATATACTTTGCCATTGCTTTTGGCATCTATT
    TATGTTTTTGGGGTAGCTGGTTTTGGATTTGACGTTTTTAATTATTGGCTAGGTATAGTG
    ATGATGCTATTTATTTCTTGGTTAGGCTTATTTTTATTTTATAAAAATAAATTTGATAGT
    GAAAATCCGAATAAAGCAGTTAATGTCATAGCAATTATAATAAAATTATTTGCATTTGGT
    GGATTATTCTATATTAGTACAATTGTACCTAACACTGCAGATGAAGAAAAATTTATATAT
    ACAAGTATTCTAATAAATTTAGCTTCTGATGCTCTTCTTGTTAGGTCATATTTTAATTAC
    GCGTTATACAAGAGTATTAAGAAAGATATCGAAAAAGTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    642

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000222
  • symbol: JSNZ_000222
  • description: DUF5079 family protein
  • length: 213
  • theoretical pI: 9.32287
  • theoretical MW: 24764.4
  • GRAVY: 0.673239

⊟Function[edit | edit source]

  • TIGRFAM:
    YhgE/Pip C-terminal domain (TIGR03062; HMM-score: 15.9)
    and 1 more
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 9.1)
  • TheSEED: data available for COL, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF5079; Domain of unknown function (DUF5079) (PF16882; HMM-score: 281.3)
    and 5 more
    DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 17.2)
    PspB; Phage shock protein B (PF06667; HMM-score: 16)
    DUF7186; Family of unknown function (DUF7186) (PF23815; HMM-score: 11.7)
    ATP_synthase (CL0255) ATP-synt_8; ATP synthase protein 8 (PF00895; HMM-score: 10.2)
    Acyl_transf_3 (CL0316) Acyl_transf_3; Acyltransferase domain (PF01757; HMM-score: 7.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9837
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0162
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000704
    • TAT(Tat/SPI): 0.000106
    • LIPO(Sec/SPII): 0.010047
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MELKVDDFVKNIKRPYLTVLGVFVVAYSLFFDSLMFFYGKLYDKLPVYLLVFMAFTAVILIMMYIQEKNENYKVEKRYVVKYLTLNVIVGYTLPLLLASIYVFGVAGFGFDVFNYWLGIVMMLFISWLGLFLFYKNKFDSENPNKAVNVIAIIIKLFAFGGLFYISTIVPNTADEEKFIYTSILINLASDALLVRSYFNYALYKSIKKDIEKV

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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