PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001171000
• symbol^?: —
• synonym:
• description^?: DUF5079 domain-containing protein
• strand^?: +
• coordinates^?: 1439946..1440598
• synteny block^?: BlockID0006900
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL0268
N315:
—
NCTC8325:
SAOUHSC_00254
Newman:
NWMN_0216
USA300_FPR3757:
SAUSA300_0275
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_0222
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_00259
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
SAB0220
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0294
VC40:
SAVC_01145

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MELKVDDFVKNIKRPYLTVLGVFVVAVSLFFDAIMFFYAKLYDKLPMYLLVFMAFTAVIL
  NCTC8325        MELKVDDFVKNIKRPYLTVLGVFVVAVSLFFDAIMFFYAKLYDKLPMYLLVFMAFTAVIL
  Newman          MELKVDDFVKNIKRPYLTVLGVFVVAVSLFFDAIMFFYAKLYDKLPMYLLVFMAFTAVIL
  USA300_FPR3757  MELKVDDFVKNIKRPYLTVLGVFVVAVSLFFDAIMFFYAKLYDKLPMYLLVFMAFTAVIL
                  ************************************************************
  
  COL             IMMYIQEKNENYKVEKRYVVRYLTLNVIVGYTLPLLFVSIYVFGVVGFGFDVFNYCLGII
  NCTC8325        IMMYIQEKNENYKVEKRYVVRYLTLNVIVGYTLPLLFVSIYVFGVVGFGFDVFNYCLGII
  Newman          IMMYIQEKNENYKVEKRYVVRYLTLNVIVGYTLPLLFVSIYVFGVVGFGFDVFNYCLGII
  USA300_FPR3757  IMMYIQEKNENYKVEKRYVVRYLTLNVIVGYTLPLLFVSIYVFGVVGFGFDVFNYCLGII
                  ************************************************************
  
  COL             LMLFISWLGLFLFYKNEFDSENPNPAVNAIAIIIKLFAFGGIFYISLIVPVTQQEEIFIG
  NCTC8325        LMLFISWLGLFLFYKNEFDSENPNPAVNAIAIIIKLFAFGGIFYISLIVPVTQQEEIFIG
  Newman          LMLFISWLGLFLFYKNEFDSENPNPAVNAIAIIIKLFAFGGIFYISLIVPVTQQEEIFIG
  USA300_FPR3757  LMLFISWLGLFLFYKNEFDSENPNPAVNAIAIIIKLFAFGGIFYISLIVPVTQQEEIFIG
                  ************************************************************
  
  COL             LSIFINIIVDALLVRSYFNYALYKSIKKDIENEGKTM
  NCTC8325        LSIFINIIVDALLVRSYFNYALYKSIKKDIENEGKTM
  Newman          LSIFINIIVDALLVRSYFNYALYKSIKKDIENEGKTM
  USA300_FPR3757  LSIFINIIVDALLVRSYFNYALYKSIKKDIENEGKTM
                  *************************************