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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000239
  • pan locus tag?: SAUPAN001211000
  • symbol: JSNZ_000239
  • pan gene symbol?: —
  • synonym:
  • product: DUF5080 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000239
  • symbol: JSNZ_000239
  • product: DUF5080 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 280954..281565
  • length: 612
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGAGTTCTTATTATTAATTGTCGTAGCCGGACTGTATTATATTATATATTTAACTGCT
    GTGATGTATTCTGAAAAAATAGTAGTATTGCCTATAATCATCTATGCCATTGTGTTTGTA
    GTAATTGGTATCACTTATATTTTTATAGGCGACAGCTATGATCAGTTAACAAATTTCAAT
    GTGATTTTGTATATGGGGAGTTTGTTTTATGCATGGATGGCTATTAGAAATCTTTGGAAC
    AGACCATTATTATTAAAATATAAGAATATTACAGATAGTTCAAGTGGAATAGTTAATAAA
    TCTGAATACAATTCAGTTGAAAGCTTACGTATAAATATTGAAATAGCTAAGTATAAAGGG
    ATTATTTCTTTGATAGTAGCTATAGTACTAACGGTATTAATGACATTAAAGTCAACACCT
    CAAATTACTGCGGAAACACGTGACTTAAGTATCTCATTTTTCATACTCAGCTTATTTATC
    ATTGTTATATTTGCTGTTTGGGATTTAATTATTAGAGTTAGAAAAGGAGCGTTTACTTTT
    GTTGTAATAAGGCCAATATTATTCAGTTGTTGGTTATTTATTTTGAATATGATTTTATCA
    AGATTATTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    612

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000239
  • symbol: JSNZ_000239
  • description: DUF5080 family protein
  • length: 203
  • theoretical pI: 9.5678
  • theoretical MW: 23348.1
  • GRAVY: 1.08177

⊟Function[edit | edit source]

  • TIGRFAM:
    TIGR04222 domain (TIGR04222; HMM-score: 4.9)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF5080; Domain of unknown function (DUF5080) (PF16883; HMM-score: 323.2)
    and 3 more
    DUF6773; Family of unknown function (DUF6773) (PF20563; HMM-score: 15.1)
    Pox_A14; Poxvirus virion envelope protein A14 (PF05767; HMM-score: 14.5)
    PilX_N; PilX N-terminal (PF14341; HMM-score: 12.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9946
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0054
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001914
    • TAT(Tat/SPI): 0.000099
    • LIPO(Sec/SPII): 0.006894
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEFLLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAIVFVVIGITYIFIGDSYDQLTNFNVILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSEYNSVESLRINIEIAKYKGIISLIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFIIVIFAVWDLIIRVRKGAFTFVVIRPILFSCWLFILNMILSRLL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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