PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001211000
• symbol^?: —
• synonym:
• description^?: DUF5080 domain-containing protein

  descriptions from strain specific annotations:

  • DUF5080 domain-containing protein
  • DUF5080 family protein
• strand^?: +
• coordinates^?: 1482655..1484574
• synteny block^?: BlockID0007230
• occurrence^?: in 70% of 33 strains

⊟Orthologs

COL:
SACOL0284
N315:
SA0284
NCTC8325:
SAOUHSC_00271
Newman:
NWMN_0231
USA300_FPR3757:
SAUSA300_0291
04-02981:
SA2981_0295
08BA02176:
C248_0284
11819-97:
MS7_0286
6850:
RSAU_000241
71193:
ST398NM01_0309
ECT-R 2:
ECTR2_256
ED133:
SAOV_0238
ED98:
SAAV_0263
HO 5096 0412:
—
JH1:
SaurJH1_0286
JH9:
SaurJH9_0279
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0271
Mu3:
SAHV_0293
Mu50:
SAV0296
MW2:
MW0271
RF122:
SAB0236
ST398:
SAPIG0309
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0310
VC40:
SAVC_01230

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MEFLLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAIVFVIIGITYIFIGDSYDQLTNFN
  N315            MEFLLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAILFVIIGITYIFIGDSYDQLTNFN
  NCTC8325        MEFLLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAIVFVIIGITYIFIGDSYDQLTNFN
  Newman          MEFLLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAIVFVIIGITYIFIGDSYDQLTNFN
  USA300_FPR3757  MEFLLLIVVAGLYYIIYLTAVMYSEKIVVLPIIIYAIVFVIIGITYIFIGDSYDQLTNFN
                  *************************************:**********************
  
  COL             VILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSEYNSVESLRINIEIAKYKG
  N315            VILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSEYNSVESLRINIEIAKYKG
  NCTC8325        VILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSEYNSVESLRINIEIAKYKG
  Newman          VILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSEYNSVESLRINIEIAKYKG
  USA300_FPR3757  VILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSEYNSVESLRINIEIAKYKG
                  ************************************************************
  
  COL             IISLIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFIIIIFAVWDLFIRVRKGAFAF
  N315            IISLIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFIIIIFAVWDLFIRVRKGAFAF
  NCTC8325        IISLIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFIIIIFAVWDLFIRVRKGAFAF
  Newman          IISLIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFIIIIFAVWDLFIRVRKGAFAF
  USA300_FPR3757  IISLIVAIVLTVLMTLKSTPQITAETRDLSISFFILSLFIIIIFAVWDLFIRVRKGAFAF
                  ************************************************************
  
  COL             VVIRPILFSCWLFILNMILSRLL
  N315            VVIRPILFSCWIFILNMILSRLL
  NCTC8325        VVIRPILFSCWLFILNMILSRLL
  Newman          VVIRPILFSCWLFILNMILSRLL
  USA300_FPR3757  VVIRPILFSCWLFILNMILSRLL
                  ***********:***********