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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000242
- pan locus tag?: SAUPAN001212000
- symbol: JSNZ_000242
- pan gene symbol?: —
- synonym:
- product: TIGR01741 family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000242
- symbol: JSNZ_000242
- product: TIGR01741 family protein
- replicon: chromosome
- strand: +
- coordinates: 282842..283333
- length: 492
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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361
421
481ATGACTTTCGAAGAAAAATTAAGTGAAATGTATAACGAGATTGCGAATAAAATTAGCAGC
ATGATACCAGTAGAGTGGGAAAAAGTATATGCAATGGCATATATAGATGTAGGATCTGGA
GAAGTGTTTTACAATTATACTGAACCAAGAAGTGAGGAATTATTTTACTATACAAGTGTG
ATAAAGAAGTATAATATATTGAAATCAAGCTTTATGGATTCAGTATATGAGTTGCATGAT
CAATTTGAGGAACTAAGAGAAGTATTTATAGAAGAAGGTCTTGAACCATGGACATCATGC
GAATTTGATTTTACAAAAGAAGATAAATTAAAAGTTTCATTTGATTATATTGATTGGATA
AATACAGAGTTTGATCAATTAGGCCGTGAAAATTATTATATGTACAAAAAATTTGGTGTT
TTACCAGAAACGGAATATGAAATGGAGGAGGTTAAAGAAATCGAGCAATATATTAAAGAG
CAAGAAGAATAG60
120
180
240
300
360
420
480
492
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000242
- symbol: JSNZ_000242
- description: TIGR01741 family protein
- length: 163
- theoretical pI: 3.96004
- theoretical MW: 19864.1
- GRAVY: -0.647239
⊟Function[edit | edit source]
- TIGRFAM: conserved hypothetical protein (TIGR01741; HMM-score: 269.1)
- TheSEED: data available for COL
- PFAM: no clan defined YezG-like; Immunity protein YezG-like (PF04634; HMM-score: 172.7)and 1 moreCBP4; CBP4 (PF07960; HMM-score: 19.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7098
- Cytoplasmic Membrane Score: 0.1909
- Cell wall & surface Score: 0.001
- Extracellular Score: 0.0984
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008008
- TAT(Tat/SPI): 0.000444
- LIPO(Sec/SPII): 0.000666
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MTFEEKLSEMYNEIANKISSMIPVEWEKVYAMAYIDVGSGEVFYNYTEPRSEELFYYTSVIKKYNILKSSFMDSVYELHDQFEELREVFIEEGLEPWTSCEFDFTKEDKLKVSFDYIDWINTEFDQLGRENYYMYKKFGVLPETEYEMEEVKEIEQYIKEQEE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000240 > JSNZ_000241 > JSNZ_000242
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)