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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 01-DEC-2025

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: EGJ38_000243 [new locus tag: EGJ38_RS01215 ]
  • pan locus tag?: SAUPAN001206000
  • symbol: EGJ38_000243
  • pan gene symbol?: —
  • synonym:
  • alternate name: JSNZ_000243
  • product: DUF5079 family protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EGJ38_000243 [new locus tag: EGJ38_RS01215 ]
  • symbol: EGJ38_000243
  • product: DUF5079 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 283543..284226
  • length: 684
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq: MGT2422249 NCBI
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGACTACTAAGGAAAATATAGACATTCTTCGAAAGCCAGGTGCACAAGCCTTAAGTTTA
    GCATCATTATTTATGATACTTTTTTCATGTCTAACTTTCTTTTTTGGTTTAGATTATGAA
    AGGTTTCCAAATTATTTAAAGATAACGACAATTATAGAATTAATAATTATCATAATTAGT
    TTACTTCAATGGATTAGATTTATAGATTTCGAAAAGGAAAGCGCACAGAAATATAAAAAA
    ATATATGCCCGATTTTTAGTTGTTATAAATGTGCTAACTACTATCACTGCAGTATTTGCA
    ACATGTAATCTTTACTATTTTGTTGCTGTGCAAAATCATTATGACCTATTCAATTATTGG
    TTGATGGGCACGATTTCAATCATAATTAGTTATTTGTTATTAGTAATTGGCGGAATGTTC
    ACGTTATTAAAATTACCTAAAGTAACAAAACGTTGGGGTGGTAAAACTAAAACCCATTTT
    GGTTTATTATTAACTGCGTTGAGCGCATTTATATATATTGAAAGAATTATCGAATATATA
    TTGGTGCCCAATGTCGTAGAATCCAAGTTTGTCATAATGGTAAGTATCATTATTATTGCT
    TGTACACAATTTGTAGCCTTTCAATTTATTATGCAATACAGTAGATTCTATATTTTTGAA
    TTAAACACTGAAGATGATGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    684


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EGJ38_000243 [new locus tag: EGJ38_RS01215 ]
  • symbol: EGJ38_000243
  • description: DUF5079 family protein
  • length: 227
  • theoretical pI: 8.70412
  • theoretical MW: 26490.5
  • GRAVY: 0.715859

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF5079; Domain of unknown function (DUF5079) (PF16882; HMM-score: 367.8)
    and 4 more
    SLATT (CL0676) DUF4231; Protein of unknown function (DUF4231) (PF14015; HMM-score: 13.3)
    2heme_cytochrom (CL0328) DUF2231; Predicted membrane protein (DUF2231) (PF09990; HMM-score: 12.3)
    MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 7.7)
    no clan defined DUF4818; Domain of unknown function (DUF4818) (PF16089; HMM-score: 7.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9957
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0042
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002326
    • TAT(Tat/SPI): 0.000359
    • LIPO(Sec/SPII): 0.483804
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: MGT2422249 NCBI
  • UniProt:

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIISLLQWIRFIDFEKESAQKYKKIYARFLVVINVLTTITAVFATCNLYYFVAVQNHYDLFNYWLMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYILVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTEDDD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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