PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001206000
• symbol^?: —
• synonym:
• description^?: DUF5079 domain-containing protein

  descriptions from strain specific annotations:

  • DUF5079 domain-containing protein
  • DUF5079 family protein
  • lipoprotein, putative
  • putative lipoprotein
• strand^?: +
• coordinates^?: 1477750..1482508
• synteny block^?: BlockID0007180
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL0290
N315:
—
NCTC8325:
—
Newman:
NWMN_0237
USA300_FPR3757:
SAUSA300_0297
04-02981:
—
08BA02176:
C248_0281
11819-97:
—
6850:
RSAU_000244
71193:
ST398NM01_0306
ECT-R 2:
—
ED133:
SAOV_0237
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
SAPIG0306
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0316
VC40:
—

⊟Genome Viewer

COL
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIIS
  Newman          MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIIS
  USA300_FPR3757  MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIIS
                  ************************************************************
  
  COL             LLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYW
  Newman          LLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYW
  USA300_FPR3757  LLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYW
                  ************************************************************
  
  COL             LMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYI
  Newman          LMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYI
  USA300_FPR3757  LMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYI
                  ************************************************************
  
  COL             LVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTEDDD
  Newman          LVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTEDDD
  USA300_FPR3757  LVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTEDDD
                  ***********************************************