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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000672
  • pan locus tag?: SAUPAN002589000
  • symbol: csbB
  • pan gene symbol?: csbB
  • synonym:
  • product: lipoteichoic acid-specific glycosylation protein CsbB

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000672
  • symbol: csbB
  • product: lipoteichoic acid-specific glycosylation protein CsbB
  • replicon: chromosome
  • strand: +
  • coordinates: 706758..707741
  • length: 984
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAAAATTAGAGTCGTCATTCCTTGTTTTAATGAAGGGGAAGTCATTACACAAACACAT
    CAACAATTAACTGAAATACTTTCACAAGATAGTAGTGTGAAAGGCTATGATTATAATATG
    CTTTTCATAGATGATGGTAGTACGGATACCACTATAGATGAAATGCAACATCTTGCCACA
    ATAGATAGACATGTCAGCTATATTTCTTTTAGCAGAAATTTTGGAAAAGAAGCAGCTATG
    ATTGCAGGTTACCAGCATAGTACTGAATTTGATGCAGTCATCATGATAGATTGTGATTTG
    CAACATCCACCTGAATATATTCCAAAAATGGTTGAAGGTTTTATGGAAGGCTATGATCAA
    GTGATTGCAAAGCGTGATAGAAGTGGTGAAAATTTTAGTCGCAAAACATTAAGCCATTTG
    TACTATAAGTTAGTTAATTGCTTTGTAGAAGAAGTACAATTTGATGATGGTGTTGGTGAT
    TTTAGACTTTTAAGCCAAAGAGCTGTTAAATCCATTGCATCACTTGAAGAATATAATCGA
    TTTTCAAAAGGGTTATTTGAATGGATAGGCTATAATACTAAAGTGTTTACGTATCAAAAT
    GTTGAGAGACAAAAAGGGGAATCTAAGTGGTCCTTTAAAAAGTTATTTAATTATGGTATT
    GATGGATTGATTTCCTTTAATAGTAAACCTTTGAGAATGATGATTTATCTTGGCTTGTTT
    ATCTTTTCAATAAGCGTGCTATATATTATCTATTTATTCATCAATATTATGATATCTGGT
    GTTAATATTCCAGGATATTTTTCAACGATTGCAGCTATTTTATTATTAGGCGGCATACAG
    TTAATTTCAATTGGTGTTGTAGGTGAATATATTGGCAGGATATATTATGAAGTTAAGGCA
    CGTCCTAAATATATTATTCAAGCTACAAATCTTTCAAGTATTGAAAATGATGAGAAGGAT
    ACCCATAAAGTTTATTCTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    984

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000672
  • symbol: CsbB
  • description: lipoteichoic acid-specific glycosylation protein CsbB
  • length: 327
  • theoretical pI: 5.92494
  • theoretical MW: 37592.9
  • GRAVY: -0.0880734

⊟Function[edit | edit source]

  • TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 46.5)
    glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 43)
    and 4 more
    chitooligosaccharide synthase NodC (TIGR04242; EC 2.4.1.-; HMM-score: 30.2)
    Unknown function Enzymes of unknown specificity transferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 20.5)
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 20)
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 17)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 95.8)
    and 3 more
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 28.1)
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 20.3)
    Glyco_transf_21; Glycosyl transferase family 21 (PF13506; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.04
    • Cytoplasmic Membrane Score: 9.96
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9987
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0012
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.0091
    • TAT(Tat/SPI): 0.000214
    • LIPO(Sec/SPII): 0.001047
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKIRVVIPCFNEGEVITQTHQQLTEILSQDSSVKGYDYNMLFIDDGSTDTTIDEMQHLATIDRHVSYISFSRNFGKEAAMIAGYQHSTEFDAVIMIDCDLQHPPEYIPKMVEGFMEGYDQVIAKRDRSGENFSRKTLSHLYYKLVNCFVEEVQFDDGVGDFRLLSQRAVKSIASLEEYNRFSKGLFEWIGYNTKVFTYQNVERQKGESKWSFKKLFNYGIDGLISFNSKPLRMMIYLGLFIFSISVLYIIYLFINIMISGVNIPGYFSTIAAILLLGGIQLISIGVVGEYIGRIYYEVKARPKYIIQATNLSSIENDEKDTHKVYSK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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