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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000687
  • pan locus tag?: SAUPAN002605000
  • symbol: ltaS
  • pan gene symbol?: ltaS
  • synonym:
  • product: polyglycerol-phosphate lipoteichoic acid synthase LtaS

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000687
  • symbol: ltaS
  • product: polyglycerol-phosphate lipoteichoic acid synthase LtaS
  • replicon: chromosome
  • strand: +
  • coordinates: 718773..720713
  • length: 1941
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    ATGAGTTCACAAAAAAAGAAAATTAGTCTTTTTGCGTTCTTCTTATTAACCGTAATAACG
    ATTACCTTGAAGACGTATTTTTCTTATTATGTTGATTTTTCTTTAGGTGTTAAAGGTTTA
    GTACAAAACTTAATATTATTGATGAATCCTTATAGTTTAGTAGCACTGGTTTTAAGTGTG
    TTCCTATTCTTTAAAGGCAAAAAAGCATTTTGGTTCATGTTCATAGGCGGCTTCTTATTG
    ACGTTCCTATTATATGCCAATGTTGTGTACTTTAGATTCTTCTCGGATTTTTTAACGTTT
    AGTACTTTAAACCAAGTAGGTAACATAGAATCTATGGGTGGTGCGGTTAGTGCATCATTC
    AAATGGTATGACTTTGTTTATTTCATTGATACGTTAGTTTACTTATTCATTTTAATATTT
    AAAACAAAATGGTTAGACACAAAAGCATTTAGTAAGAAATTTGTTCCTGTCGTAATGGCG
    GCTTCAGTAGCATTATTCTTCTTAAACTTAGCTTTTGCTGAAACTGACAGACCAGAATTA
    TTAACACGTACATTTGACCATAAATATTTAGTGAAATATTTAGGACCGTATAACTTTACA
    GTATACGATGGTGTTAAAACTATCGAAAATAATCAACAAAAAGCGTTAGCATCTGAAGAT
    GACTTAACAAAAGTATTAAATTATACGAAACAACGTCAAACAGAGCCTAATCCAGAATAT
    TATGGGGTGGCAAAGAAGAAAAATATTATTAAGATTCATTTAGAAAGTTTCCAAACCTTC
    TTAATTAATAAAAAGGTTAATGGTAAAGAAGTAACACCGTTTTTAAACAAATTATCAAGT
    GGGAAAGAGCAATTCACATACTTCCCTAACTTTTTCCATCAAACAGGTCAAGGTAAAACA
    TCTGACTCTGAATTTACAATGGATAACAGTTTATACGGTTTACCGCAAGGTTCTGCCTTT
    TCATTAAAAGGAGATAATACGTATCAGTCACTACCAGCAATTTTAGATCAAAAGCAAGGC
    TACAAATCTGATGTCATGCACGGTGACTATAAAACATTCTGGAACAGAGACCAAGTATAT
    AAACACTTTGGTATCGATAAATTCTATGATGCAACATACTATGACATGTCTGATAAAAAC
    GTTGTAAACTTAGGCTTGAAAGACAAAATTTTCTTTAAAGATTCTGCTAATTATCAAGCT
    AAGATGAAATCACCATTCTATTCTCATTTAATTACTTTGACTAACCACTATCCATTCACA
    TTAGATGAAAAGGATGCAACAATTGAGAAGTCAAACACAGGTGATGCAACAGTTGATGGT
    TATATTCAAACAGCGCGTTATTTAGACGAAGCATTAGAAGAATATATTAATGACTTGAAG
    AAAAAAGGATTATATGACAATTCAGTGATTATGATTTATGGTGACCACTATGGTATCTCT
    GAAAACCATAACAATGCCATGGAAAAACTATTAGGTGAAAAAATCACACCAGCTAAATTT
    ACAGATTTAAACAGAACTGGTTTCTGGATTAAAATCCCTGGTAAATCTGGTGGTATCAAT
    AATGAATATGCTGGTCAAGTCGATGTAATGCCAACAATTTTACATTTGGCTGGTATAGAT
    ACGAAGAATTATTTAATGTTCGGTACTGATTTATTCTCTAAAGGTCATAATCAAGTAGTT
    CCATTCAGAAATGGTGACTTTATAACAAAAGATTATAAATATGTTAATGGTAAGATTTAT
    TCTAATAAAAATAATGAACTCATAACTACTCAACCAGCTGATTTCGAAAAGAATAAAAAG
    CAAGTTGAAAAGGATCTCGAAATGAGTGACAACGTGCTTAATGGTGATTTGTTTAGATTC
    TACAAAAATCCAGACTTCAAAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCT
    AAAGCAAACTCTAAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1941

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000687
  • symbol: LtaS
  • description: polyglycerol-phosphate lipoteichoic acid synthase LtaS
  • length: 646
  • theoretical pI: 9.4708
  • theoretical MW: 74413.6
  • GRAVY: -0.317183

⊟Function[edit | edit source]

  • TIGRFAM:
    choline-sulfatase (TIGR03417; EC 3.1.6.6; HMM-score: 20.4)
    and 1 more
    frataxin (TIGR03422; HMM-score: 12.3)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Alk_phosphatase (CL0088) Sulfatase; Sulfatase (PF00884; HMM-score: 134.3)
    and 4 more
    DUF229; Protein of unknown function (DUF229) (PF02995; HMM-score: 20.1)
    Phosphodiest; Type I phosphodiesterase / nucleotide pyrophosphatase (PF01663; HMM-score: 19.2)
    DUF1501; Protein of unknown function (DUF1501) (PF07394; HMM-score: 15.1)
    no clan defined DUF6264; Family of unknown function (DUF6264) (PF19779; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9991
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0009
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008585
    • TAT(Tat/SPI): 0.000154
    • LIPO(Sec/SPII): 0.048829
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNIESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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