From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000710
  • pan locus tag?: SAUPAN002644000
  • symbol: JSNZ_000710
  • pan gene symbol?: —
  • synonym:
  • product: GrpB family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000710
  • symbol: JSNZ_000710
  • product: GrpB family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 744850..745368
  • length: 519
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGTATTCAAATGTTCAACCATTCATTAATAGTGATTTAACTATTTGTTTTCAATCACAA
    TACACTGAAATTGAATCATTATTATTCAACCTCTTAGACAGCCCAGTAAAATATACAAAA
    CATATTGGCGGTACGCATCATTTTAAATATTCAACAGAGCCAATTTTAGATATTTTAGTA
    GGTGTAGAAAATTTACATGATATTACATCCTTAGATGAAAAACGCTTAAATTATGTAGGG
    TTTTATCGTTTGCATCATAAATATACTAAGAAAGTTATGATGGCGAAGTTTAACAATTTT
    CATGAACTAAAACAACAGGTGCGTCTACATATCATTCAAATGAATACCCAAACATTTGAA
    TCTTATCTTGCACTTGATTACCTCTTATCAACTAATGATGATATTGCTTTGCAATTCAAT
    ACAAAAAAGCACCAAATATTGCAACATAGCTTAACAATTAGACAATATGAGATGCAAAAG
    CAACAATACTTTGAAAAACTATGTAAAAAATACTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    519

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000710
  • symbol: JSNZ_000710
  • description: GrpB family protein
  • length: 172
  • theoretical pI: 8.60072
  • theoretical MW: 20604.6
  • GRAVY: -0.438953

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    NTP_transf (CL0260) GrpB; GrpB protein (PF04229; HMM-score: 85.7)
    and 1 more
    no clan defined DUF4517; Domain of unknown function (DUF4517) (PF15006; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8631
    • Cytoplasmic Membrane Score: 0.1125
    • Cell wall & surface Score: 0.0013
    • Extracellular Score: 0.0231
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003182
    • TAT(Tat/SPI): 0.00014
    • LIPO(Sec/SPII): 0.001104
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MYSNVQPFINSDLTICFQSQYTEIESLLFNLLDSPVKYTKHIGGTHHFKYSTEPILDILVGVENLHDITSLDEKRLNYVGFYRLHHKYTKKVMMAKFNNFHELKQQVRLHIIQMNTQTFESYLALDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKYL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=JSNZ_000710&oldid=106351"