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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000849
  • pan locus tag?: SAUPAN002974000
  • symbol: JSNZ_000849
  • pan gene symbol?: —
  • synonym:
  • product: minor capsid protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000849
  • symbol: JSNZ_000849
  • product: minor capsid protein
  • replicon: chromosome
  • strand: +
  • coordinates: 856186..857181
  • length: 996
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    TTGCCTAACAAAAACACTCAAGAATATTGGGAAGAACGCGGACGCAAAGCAATCGAGAAT
    GAGTTGAAGCGTGATAAAACTAAAGCTGAAGAAATAGAACGTATATTGAATATGATGATT
    AAGCGCATTGAAAAAGAAATCAATGCGTTTATTGTTAAGTACGGAGATTTTGCAGGCGTT
    ACATTACAAGAAGCACAAAAGATTATTGATGAGTTCGATGTAAAAGCGTTTCAAGAAGAA
    GCAAAAAGATTGGTCGAAAACAAGGACTTTAGCGATAGAGCAAATGAAGAATTAAAGAAG
    TATAACACTAAGATGTATGTATCTAGAGAACAGATGTTAAAGATTCAAATAGAATTCTTA
    ATTGCTTATGCAACAGCTCAAACAGAATTATCGATGAGGGAATATTTCGAATCAACAGCT
    TATCGTGTGTTCAGTGATCAAGCGGGTATTTTAGGTGAAGGTGTACAAGTAGCTAAAGAA
    GTTATAGATACAATCGTTGATACACAATTTCATGGTGTCGTTTGGTCAGAGCGATTATGG
    ACTAATACTGAAGCGATGAAACAAGAAGTAGAAGAAATAATTGCTAATGTGGTTATTAGA
    GGTCGACATCCAAATGAATATGTTAAAGATATGCGCAAGCACCTAAACAAATTCGAAGGC
    ACAGCAAGACAAAAGACTGCAGCAATTAAATCATTGCTTTATACGGAATCGGCACGTGTT
    CACGCACAATCAAGTATTGACAGCATGAAAGAAATTTCACCGGAAGGATATTATATGTAT
    ATTGCAAAAATTGATAGTAGAACAACTAAAGTATGCAAGGGGCTTAATGGAGAAATATTC
    AAAGTTAAAGACGCTAAAATTGGTGTTAATTTCTACCCTATGCATATCAATTGTCGTTCA
    GATTGTGCATTACTACCTAAATCTATGTGGCCGAAAAAACCAAACAAGAAACGAAAAACA
    AAATACTTCGGAGGAAAAGTGGAAAGCGATGATTGA
    60
    120
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    360
    420
    480
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    660
    720
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    840
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    996

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000849
  • symbol: JSNZ_000849
  • description: minor capsid protein
  • length: 331
  • theoretical pI: 9.07109
  • theoretical MW: 38536.9
  • GRAVY: -0.667674

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage head morphogenesis protein, SPP1 gp7 family (TIGR01641; HMM-score: 136.4)
  • TheSEED:
  • PFAM:
    no clan defined Phage_Mu_F; Phage Mu protein F like protein (PF04233; HMM-score: 47.3)
    and 4 more
    6PGD_C (CL0106) Octopine_DH; NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain (PF02317; HMM-score: 15.2)
    GH84_C (CL0770) NagJ_C; Hyaluronidase post-catalytic domain-like (PF21774; HMM-score: 14)
    RNase_H (CL0219) DUF99; Protein of unknown function DUF99 (PF01949; HMM-score: 12.8)
    no clan defined PSD4; Protein of unknown function (DUF1592) (PF07631; HMM-score: 11.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.2484
    • Cytoplasmic Membrane Score: 0.1382
    • Cell wall & surface Score: 0.0252
    • Extracellular Score: 0.5882
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003348
    • TAT(Tat/SPI): 0.000304
    • LIPO(Sec/SPII): 0.000487
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MPNKNTQEYWEERGRKAIENELKRDKTKAEEIERILNMMIKRIEKEINAFIVKYGDFAGVTLQEAQKIIDEFDVKAFQEEAKRLVENKDFSDRANEELKKYNTKMYVSREQMLKIQIEFLIAYATAQTELSMREYFESTAYRVFSDQAGILGEGVQVAKEVIDTIVDTQFHGVVWSERLWTNTEAMKQEVEEIIANVVIRGRHPNEYVKDMRKHLNKFEGTARQKTAAIKSLLYTESARVHAQSSIDSMKEISPEGYYMYIAKIDSRTTKVCKGLNGEIFKVKDAKIGVNFYPMHINCRSDCALLPKSMWPKKPNKKRKTKYFGGKVESDD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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