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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000866
  • pan locus tag?: SAUPAN002993000
  • symbol: JSNZ_000866
  • pan gene symbol?: —
  • synonym:
  • product: BppU family phage baseplate upper protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000866
  • symbol: JSNZ_000866
  • product: BppU family phage baseplate upper protein
  • replicon: chromosome
  • strand: +
  • coordinates: 870510..872333
  • length: 1824
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGGTAGTAGATAATTTTTCAAAAGATGATAACTTAATCGAGTTACAAACAACATCACAA
    TATAATCCGGTTATTGACACAAACATCAGTTTCTATGAATCAGATAGAGGAACTGGTGTT
    TTAAATTTTGCAGTAACTAAGAATAATAAGCCGTTATCAATCAGCAAACATAATGCGATG
    ACTAGTATTGTGCTTAAGACGGATAACTTCGACGATGAACACGGCGCTTATATTAGTGAT
    GAACTTACAATTGTTGATGCAATTAATGGACGAATGCAATACGTTATCCCAAACGAGTTC
    TTAAAATACACTGGTCGAGTACATGCGCAAGCATATTTTACTCAAAACGGTAGCAATAAC
    GTAATTGTAGAGCGTCAATTTAACTTCAATATCCAGAATGATCTAATTAGTAATTTTGAC
    AGTAAAACAAAGCTAGTTTATATCAAATCAATTCAGGACTTAACAGAAAGTGTTAAAGAA
    GAAGTTGAGGACTTAAAGAAAAGTTTGAGTGATACAAAATCGTTGGTTACTGAAATTGAT
    AGTCGTATTAATCAAGGTATTCAAAGATTAGAAATCAAACAAAATGAAGCGGTACAGATG
    ATTACAACAACACAAGACAAAGCCGTTCAATATATAAATAGCGAGTTCCAGAAAATTGTT
    GATAAAGAGCAAGCGATTTTTGAACGTGTTAACGAAGTTGAACAACAAATCAATGGCGCT
    GACCTTGTTAAAGGTAATTCAACAACAAATTGGCAAAAGTCTAAACTTACTGATGATTAC
    GGTAAAGCGATCGAATCATCTGAACAGTCAATAGAAGCTGTTTTAAGACACGCTAACTCA
    TCTATGATTATTCATATTACTAATGCAAAAGATGCGCCAGAAAAGGCGGATATAGGCACG
    TTAGAGAAGCCCGGACAAGATGGTGTTGATGACGGTTCTTCGTTCGATGAATCAACTTAT
    ACATCAAGCAAATCTGGTGTGTTAGTTGTTTATGTTGTTGATAATAATACTGCTCGTGCA
    ACATGGTACCCAGATGATTCAAACGATGAGTACACAAAATACAAAATCTACGGCACGTGG
    TACCCGTTTTATAAAAAGAATGATGGAAACTTAACTAAGCAATTTGTTGAAGAAATATCT
    AACAACACACTGAATCAAGCTAAACAGTATGTAGATGGTAAGTTACAAAGTATAAGTTGG
    CAACAACATAAGTTAACAGAACATAACGGTCAATCAATCCAAAAGAACTTATATAACGCC
    AAAGGTAATTTAGAAGCATTGGGCGCTGGGAATTATTACGTAACAAGTGTGCCTGATTTA
    CCAGGTAGCGTTGAAAGTTATGAGGGTTATTTATCGGTATTCGTTAAAGATGATACAAAC
    AAGCTATTTAACTTCACACCTTATAACTCTAAAAAGATTTACACACGATCAATCACAAAC
    GGCAGACTTGAGCAACAGTGGACAGTTCCTAATGAACATAAATCAACGGTATTGTTCGAC
    GGTGGCGCAAATGGTGTAGGTACAACAATCAATCTAACTGAACCGTACACAAACTATTCT
    ATTTTGTTGGTAAGTGGAACTTATCCAGGTGGCGTTATTGAGGGATTCGGACTAACTGCA
    TTACCTAACGCGATTCAATTGAGTAAAGCGAATGTAGTTGACTCAGACGGCAACGGTGGC
    GGTATTTATGAGTGCTTACTATCCAAAACAAGTAGCACTACTTTAAGAATAGATAACGAT
    GTGTACTTTGATTTAGGTAAAACATCAGGTTCTGGAGCGAATGCCAACAAAGTTACTATA
    ACTAAAATTATGGGGTGGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1824

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000866
  • symbol: JSNZ_000866
  • description: BppU family phage baseplate upper protein
  • length: 607
  • theoretical pI: 4.73763
  • theoretical MW: 67671.5
  • GRAVY: -0.558155

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA repair protein RecN (TIGR00634; HMM-score: 14.8)
    and 2 more
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis poly(hydroxyalkanoate) granule-associated protein (TIGR01837; HMM-score: 7.5)
    conjugal transfer/type IV secretion protein DotA/TraY (TIGR04346; HMM-score: 5.7)
  • TheSEED:
  • PFAM:
    E-set (CL0159) BppU_N; BppU N-terminal domain (PF10651; HMM-score: 121.6)
    and 10 more
    no clan defined DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 23.5)
    Beta_propeller (CL0186) WD40_Prp19; Prp19 WD40 domain (PF24814; HMM-score: 18.8)
    RGM (CL0741) VWD; von Willebrand factor type D domain (PF00094; HMM-score: 13.2)
    no clan defined Tup_N; Tup N-terminal (PF08581; HMM-score: 12.5)
    DUF5798; Family of unknown function (DUF5798) (PF19111; HMM-score: 10.5)
    LUC7; LUC7 N_terminus (PF03194; HMM-score: 9.7)
    Phasin; Poly(hydroxyalcanoate) granule associated protein (phasin) (PF05597; HMM-score: 9)
    PAS_Fold (CL0183) PAS_GdpP; Cyclic-di-AMP phosphodiesterase GdpP-like, PAS domain (PF21370; HMM-score: 7.4)
    no clan defined Tweety; Tweety (PF04906; HMM-score: 7.3)
    RRP36; rRNA biogenesis protein RRP36 (PF06102; HMM-score: 7.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0064
    • Cytoplasmic Membrane Score: 0.0033
    • Cell wall & surface Score: 0.0348
    • Extracellular Score: 0.9555
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008185
    • TAT(Tat/SPI): 0.001471
    • LIPO(Sec/SPII): 0.001684
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVVDNFSKDDNLIELQTTSQYNPVIDTNISFYESDRGTGVLNFAVTKNNKPLSISKHNAMTSIVLKTDNFDDEHGAYISDELTIVDAINGRMQYVIPNEFLKYTGRVHAQAYFTQNGSNNVIVERQFNFNIQNDLISNFDSKTKLVYIKSIQDLTESVKEEVEDLKKSLSDTKSLVTEIDSRINQGIQRLEIKQNEAVQMITTTQDKAVQYINSEFQKIVDKEQAIFERVNEVEQQINGADLVKGNSTTNWQKSKLTDDYGKAIESSEQSIEAVLRHANSSMIIHITNAKDAPEKADIGTLEKPGQDGVDDGSSFDESTYTSSKSGVLVVYVVDNNTARATWYPDDSNDEYTKYKIYGTWYPFYKKNDGNLTKQFVEEISNNTLNQAKQYVDGKLQSISWQQHKLTEHNGQSIQKNLYNAKGNLEALGAGNYYVTSVPDLPGSVESYEGYLSVFVKDDTNKLFNFTPYNSKKIYTRSITNGRLEQQWTVPNEHKSTVLFDGGANGVGTTINLTEPYTNYSILLVSGTYPGGVIEGFGLTALPNAIQLSKANVVDSDGNGGGIYECLLSKTSSTTLRIDNDVYFDLGKTSGSGANANKVTITKIMGWK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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