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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001000
  • pan locus tag?: SAUPAN003237000
  • symbol: JSNZ_001000
  • pan gene symbol?: —
  • synonym:
  • product: Fe(3+) dicitrate ABC transporter substrate-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001000
  • symbol: JSNZ_001000
  • product: Fe(3+) dicitrate ABC transporter substrate-binding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1003581..1004540
  • length: 960
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGAATAGGAATATCGTTAAACTAGTTGTGTTTATGCTAATTTTAGTTGTAGCAGTAGCG
    GGTTGTGGTCAAAAAGATACTGAAGAGAAAACTGAAATGACGACAATAAAAGATGAATTA
    GGAACTGAAAAAATTAAGAAAAATCCTAAACGTGTTGTTGTATTAGAATATAGTTTTGCT
    GATTATTTAGCAGCATTAGATATGAAACCTGTTGGTATTGCAGATGATGGCAGCACTAAA
    AATATAACAAAGTCAGTAAGAGATAAGATTGGGGCATATGAATCGGTTGGGTCTAGACCG
    CAACCGAATATGGAAGTGATAAGTAAATTAAAACCGGATTTGATCATTGCAGATGTTAGC
    AGACATAAGAAAATCAAATCAGAATTGAGCAAAATTGCGCCGACAATTATGTTAGTCAGT
    GGTACGGGCGATTATAATGCAAATATTGAAGCATTTAAAACAGTCGCTAAAGCAGTAGGC
    AAAGAGAAAGAAGGCGAGAAACGTCTGGAAAAGCATGATAAAATATTAGCGGAGATTAGA
    AAGAAAATTGAACAGAGTACGTTAAAATCTGCATTTGCATTCGGTATCTCAAGAGCAGGT
    ATGTTTATTAATAATGAAGATGCATTTATGGGACAATTCTTAATTAAAATGGGTATTCAA
    CCTGAAGTCACAAAAGACAAAACTACTCATGTTGGTGAACGCAAGGGTGGTCCTTATATT
    TATTTAAATAATGAAGAACTTGCCAATATCAATCCAAAAGTTATGATTTTAGCCACTGAC
    GGAAAAACGGACAAAAATAGAACGAAATTCATTGATCCTGCAGTTTGGAAATCATTAAAA
    GCTGTGAAAGATAACAAAGTTTATGACGTTGACCGAAATAAGTGGTTGAAATCAAGGGGG
    ATTATCGCAAGTGAAAGTATGGCAGAAGATTTAGAAAAAATTGTAGAAAAAGCAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001000
  • symbol: JSNZ_001000
  • description: Fe(3+) dicitrate ABC transporter substrate-binding protein
  • length: 319
  • theoretical pI: 10.0458
  • theoretical MW: 35564.2
  • GRAVY: -0.395298

⊟Function[edit | edit source]

  • TIGRFAM:
    heme ABC transporter, heme-binding protein isdE (TIGR03659; HMM-score: 93.4)
    and 2 more
    putative ABC transporter PGF-CTERM-modified substrate-binding protein (TIGR04281; HMM-score: 27.1)
    Metabolism Transport and binding proteins Amino acids, peptides and amines lipoprotein, PulS/OutS family (TIGR01004; HMM-score: 11.8)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Chelatase (CL0043) Peripla_BP_2; Periplasmic binding protein (PF01497; HMM-score: 112.7)
    and 3 more
    LppaM (CL0421) LPAM_2; Prokaryotic lipoprotein-attachment site (PF13627; HMM-score: 16.9)
    no clan defined DUF7159; Family of unknown function (DUF7159) (PF23717; HMM-score: 13.7)
    Ish1; Putative nuclear envelope organisation protein (PF10281; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.81
    • Cellwall Score: 0.09
    • Extracellular Score: 0.1
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.954
    • Cell wall & surface Score: 0.0075
    • Extracellular Score: 0.0384
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 21 aa
    • SP(Sec/SPI): 0.000485
    • TAT(Tat/SPI): 0.000074
    • LIPO(Sec/SPII): 0.999197
    • Cleavage Site: CS pos: 21-22. VAG-CG. Pr: 0.9998
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNRNIVKLVVFMLILVVAVAGCGQKDTEEKTEMTTIKDELGTEKIKKNPKRVVVLEYSFADYLAALDMKPVGIADDGSTKNITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVSRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDAFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYIYLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIVEKAK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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