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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0941 [new locus tag: SAUSA300_RS05055 ]
  • pan locus tag?: SAUPAN003237000
  • symbol: SAUSA300_0941
  • pan gene symbol?: —
  • synonym:
  • product: putative ferrichrome ABC transporter

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0941 [new locus tag: SAUSA300_RS05055 ]
  • symbol: SAUSA300_0941
  • product: putative ferrichrome ABC transporter
  • replicon: chromosome
  • strand: +
  • coordinates: 1029841..1030704
  • length: 864
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGACGACAATAAAAGATGAATTAGGAACTGAAAAAATTAAGAAAAATCCTAAACGTGTT
    GTTGTATTAGAATATAGTTTTGCTGATTATTTAGCAGCATTAGATATGAAACCTGTTGGT
    ATTGCAGATGATGGCAGCACTAAAAATATAACAAAGTCAGTAAGAGATAAGATTGGGGCA
    TATGAATCGGTTGGATCTAGACCGCAACCGAATATGGAAGTGATAAGTAAATTAAAACCG
    GATTTGATCATTGCAGATGTTAGCAGACATAAGAAAATCAAATCAGAATTGAGCAAAATT
    GCTCCGACAATCATGTTAGTTAGCGGTACGGGAGATTATAATGCAAATATTGAAGCATTT
    AAAACAGTCGCTAAAGCAGTAGGCAAAGAGAAAGAAGGCGAGAAGCGTCTGGAAAAGCAT
    GATAAAATATTAGCGGAGATTAGAAAGAAAATTGAACAGAGTACGTTAAAATCTGCATTT
    GCATTCGGTATCTCAAGAGCAGGTATGTTTATTAATAATGAAGATACATTTATGGGACAA
    TTCTTAATTAAAATGGGTATTCAACCTGAAGTCACAAAAGACAAAACTACGCATGTTGGT
    GAACGCAAGGGTGGTCCTTATATATATTTAAATAATGAAGAACTTGCCAATATCAATCCA
    AAAGTTATGATTTTAGCCACTGACGGAAAAACGGACAAAAATAGAACGAAATTCATTGAT
    CCTGCAGTTTGGAAATCATTAAAAGCTGTGAAAGATAACAAAGTTTATGACGTTGACCGA
    AATAAGTGGTTGAAATCAAGGGGGATTATCGCAAGTGAAAGTATGGCAGAAGATTTAGAA
    AAAATTGCAGAAAAAGCAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    864

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0941 [new locus tag: SAUSA300_RS05055 ]
  • symbol: SAUSA300_0941
  • description: putative ferrichrome ABC transporter
  • length: 287
  • theoretical pI: 10.128
  • theoretical MW: 32034.9
  • GRAVY: -0.510105

⊟Function[edit | edit source]

  • TIGRFAM:
    heme ABC transporter, heme-binding protein isdE (TIGR03659; HMM-score: 81.5)
    and 1 more
    putative ABC transporter PGF-CTERM-modified substrate-binding protein (TIGR04281; HMM-score: 30.5)
  • TheSEED  :
    • Heme ABC type transporter HtsABC, heme-binding protein
    Iron acquisition and metabolism Iron acquisition and metabolism - no subcategory Heme, hemin uptake and utilization systems in GramPositives  Heme ABC type transporter HtsABC, heme-binding protein
    and 1 more
    Stress Response Stress Response - no subcategory Flavohaemoglobin  Heme ABC type transporter HtsABC, heme-binding protein
  • PFAM:
    Chelatase (CL0043) Peripla_BP_2; Periplasmic binding protein (PF01497; HMM-score: 116.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.17
    • Cytoplasmic Membrane Score: 9.51
    • Cellwall Score: 0.16
    • Extracellular Score: 0.15
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009825
    • TAT(Tat/SPI): 0.000832
    • LIPO(Sec/SPII): 0.001248
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTTIKDELGTEKIKKNPKRVVVLEYSFADYLAALDMKPVGIADDGSTKNITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVSRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYIYLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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