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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001360
  • pan locus tag?: SAUPAN003780000
  • symbol: JSNZ_001360
  • pan gene symbol?: —
  • synonym:
  • product: Cof-type HAD-IIB family hydrolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001360
  • symbol: JSNZ_001360
  • product: Cof-type HAD-IIB family hydrolase
  • replicon: chromosome
  • strand: +
  • coordinates: 1376106..1376873
  • length: 768
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAGATTTGTCTTTGATATTGATGGTACGCTTTGTTTTGACGGCCGATTAATTGACCAG
    ACTATTATTGATACATTGTTACAATTACAACATGCTGGTCATGAACTTATATTTGCATCA
    GCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTA
    ATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATT
    CATACAGATACATATCACCATATCTTAAAAATAATTCAAAAGTATGAGTTAGATTATATT
    ATTGATGATGATTGGAATTATGCTGCACAACTTGACGCTGAGAACGCGATTTTTGAGCGT
    TTAGATCCACATAAGCTGGCCAGTTGTATTGATGTTGCAAATATCGACACACCAATCAAG
    ATCATTTTATTAAATATAGACCCGGCACAAATTACAACTATATTAGACGAGCTAAATAAA
    TACCATCAAGAATTGGAAATGATTCACCATTCAAATGAGTATAACATTGATATAACAGCG
    CAAAATATTAATAAATATACTGCATTACAATATATATTTGATGCAGATGTTAAATATATA
    GCATTTGGTAATGACCACAATGATATTGTCATGTTACAACATGCTAGTAGTGGCTATATT
    ATAGGACCATCAGAAGCATACACACACGCAATATTGAAACTTGATAAAATCAAACACATC
    AATAATAATACACAAGCTATTTGCAAAGTCTTAAAATCATATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    768

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001360
  • symbol: JSNZ_001360
  • description: Cof-type HAD-IIB family hydrolase
  • length: 255
  • theoretical pI: 5.9534
  • theoretical MW: 29098.1
  • GRAVY: -0.0776471

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function Enzymes of unknown specificity Cof-like hydrolase (TIGR00099; HMM-score: 183.9)
    and 3 more
    Unknown function Enzymes of unknown specificity HAD hydrolase, family IIB (TIGR01484; HMM-score: 64.2)
    phosphoglycolate phosphatase, TA0175-type (TIGR01487; EC 3.1.3.18; HMM-score: 25.2)
    mannosyl-3-phosphoglycerate phosphatase family (TIGR01486; EC 3.1.3.-; HMM-score: 18.2)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    HAD (CL0137) Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 127.4)
    and 6 more
    S6PP; Sucrose-6F-phosphate phosphohydrolase (PF05116; HMM-score: 23.3)
    Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 17.8)
    HHH (CL0198) HHH_7; Helix-hairpin-helix motif (PF14635; HMM-score: 13.8)
    HAD (CL0137) Hydrolase_6; haloacid dehalogenase-like hydrolase (PF13344; HMM-score: 13.2)
    no clan defined Dit_C; Dit, C-terminal domain (PF21766; HMM-score: 11.6)
    OmpH; Outer membrane protein (OmpH-like) (PF03938; HMM-score: 9.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9927
    • Cytoplasmic Membrane Score: 0.0002
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.007
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004053
    • TAT(Tat/SPI): 0.000532
    • LIPO(Sec/SPII): 0.000307
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRFVFDIDGTLCFDGRLIDQTIIDTLLQLQHAGHELIFASARPIRDLLPVLPSVFHQHTLIGANGAMISQQSKISVIKPIHTDTYHHILKIIQKYELDYIIDDDWNYAAQLDAENAIFERLDPHKLASCIDVANIDTPIKIILLNIDPAQITTILDELNKYHQELEMIHHSNEYNIDITAQNINKYTALQYIFDADVKYIAFGNDHNDIVMLQHASSGYIIGPSEAYTHAILKLDKIKHINNNTQAICKVLKSYK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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