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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001643
  • pan locus tag?: SAUPAN004260000
  • symbol: JSNZ_001643
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001643
  • symbol: JSNZ_001643
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1676801..1677085
  • length: 285
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    GTGACTCTATTTATTATTATCGGGGTTCTCGTGCCAATGGTTTATACCATGCAGTTAAAT
    ATTAAAAATGAACCTGTAACAAAGCGCAATCTATTAATAACATTAGCTTTATCTACGTTA
    GGTATTTTAGTAACCGCGTTTGCAGGTGTGATCGTTACGAAACAAGCTTTTCCTTTATTA
    AGTGTAGCAATCGGCTCAATTTTTACTGGAATCGTTTGGGGTCTTTTACTAAGTGGTAGC
    TACGCGCTGATACGATTTTTATCTAACGCATTTGGGCGTAAGTAA
    60
    120
    180
    240
    285

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001643
  • symbol: JSNZ_001643
  • description: hypothetical protein
  • length: 94
  • theoretical pI: 11.2593
  • theoretical MW: 10154.3
  • GRAVY: 1.14574

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Holin-V (CL0562) Phage_holin_5_2; Phage holin family Hol44, in holin superfamily V (PF16079; HMM-score: 14.6)
    no clan defined DUF6343; Family of unknown function (DUF6343) (PF19870; HMM-score: 13.9)
    CopD_like (CL0430) YtpI; YtpI-like protein (PF14007; HMM-score: 12.2)
    no clan defined DUF6404; Family of unknown function (DUF6404) (PF19942; HMM-score: 11.9)
    and 3 more
    TssN; Type VI secretion system, TssN (PF17555; HMM-score: 8.8)
    GT-C (CL0111) YfhO; Bacterial membrane protein YfhO (PF09586; HMM-score: 8.5)
    no clan defined DUF6814; Family of unknown function (DUF6814) (PF20664; HMM-score: 7.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0004
    • Cytoplasmic Membrane Score: 0.9804
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0192
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.025022
    • TAT(Tat/SPI): 0.001415
    • LIPO(Sec/SPII): 0.026549
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTLFIIIGVLVPMVYTMQLNIKNEPVTKRNLLITLALSTLGILVTAFAGVIVTKQAFPLLSVAIGSIFTGIVWGLLLSGSYALIRFLSNAFGRK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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