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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001774
  • pan locus tag?: SAUPAN004486000
  • symbol: JSNZ_001774
  • pan gene symbol?: —
  • synonym:
  • product: IS1182 family transposase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS, pseudogene
  • locus tag: JSNZ_001774
  • symbol: JSNZ_001774
  • product: IS1182 family transposase
  • replicon: chromosome
  • strand: +
  • coordinates: 1825242..1826887
  • length: 1646
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGTATAAAAATTATAACATGACCCAACTTACACTACCAATAGAAACTACTGTTAGAATT
    CCTCAGAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGATACCTGATAGTGAA
    TTCGATGAATTCAGACATCATTGTGGCGCAACATCCTATCATCCAAAAATGATGTTAAAA
    ATTATCTTATATGCATATATTCAATCTGTACTTTCTGGTCGTAGAATAGAGAAATTACTT
    CATGACAGTATTCGAATGATGTGGTTAGCTCAAAATCAAACACCTTCTTATAAAACTATT
    AATCGTTTTAGAGTAAATTCTAATACTGATGTGTTAATTGAATCTTTATTTATCCAGTTT
    CATAGTCAATGTTTAAAGCAAAATCTTATTGATAATAATTCAACTTTTATTGATGGTACA
    AAAGTAGAAGCTAATGCCAATAGGTATACATTTGTGTGGAAGAAAAGTATTCAAAATCAC
    GAATTGAAATTGAATGAAAATTCAAAAGCATTATATCGTGACTTAGTTGAAGAAAAAATA
    ATACTAGAGATTAAAGAAGATGGAGATAGCGATTTAACAACAGAAGAAATTGATTTAGTT
    GGTAGTCATTTAGATAAAGAAATCGAAGATTTAAATCATTCTATTGAGAACGAAAACTGT
    ACTCAAATTAGAAAACAGACTCGTAAAAAAGAACTGAGATTAAGAAGTTTAAAAATAAAT
    TTGATGATTATTCTGAGAGAAAAAGTAAATATGAATAGCAAAAATCGATTCTTAAAGATA
    GAAATAGCTTTTCAAAAACTGATCATGATGCAACTTTTATGAGAATGAAGGAAGACCATA
    TGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAATTCTCAATTTG
    TTTTATCCTATGACCTATTTAAAAACCCGACAGATACTAGAACTTTAATTCCATTTTTAA
    CAATGATTCAAAATACCTTCGGTTATTTACCGGAGTATATTGTAGCTGATGCAGGTTATG
    GTAGTGAGCAAAACTATATGGCTATTATAGATGATTTTAATAAAACGCCACTTATTACGT
    ATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTTAACACTCAAA
    ATTGGAAATATGACGAACTTAATGATGAATTTATATGTCCTAATAACAAAAGAATAGGTT
    TTAAAAGATATGCATACCGTAATGATAGATATGGTTTCAAACGAGACTTCAAACTATATG
    AATGTGATGACTGTTCATCATGTTCTTTGAGACATCAATACATGAAGCCAAATTAGAAAT
    CCAATAAGAAAATTATGAAGAATTATAATTGGGAATTCTTTAAAGCCCAAATTAATCAAA
    AGCTTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTG
    TTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAATGTCAGTTCGAGGAATAAATA
    AAGTTAAACGAGAGGTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTC
    AACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATA
    GAAATCAGCTTTTTTACATTGCCTAA
    60
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    240
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    720
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    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1646

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001774
  • symbol: JSNZ_001774
  • description: IS1182 family transposase
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • DeepLocPro:
  • LocateP:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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