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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN004486000
- symbol?: —
- synonym:
- description?: IS5/IS1182 family transposase
- IS5/IS1182 family transposase
- IS1182 family transposase
- putative transposase for IS1272
- pseudogene
- putative transposase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4723146..4728797
- synteny block?: BlockID0034820
- occurrence?: in 29% of 34 strains
ψ tnpSau3 : degenerate ISSau3 family transposase pseudogene
Staphylococci contain several degenerate insertion sequences that are no longer likely to be functional. This Sau3 family transposase pseudogene lacks the first two codons, replacing one of them with an in-frame stop codon at position 2 that is unlikely to be avoided by frame-slipping or other bypass mechanisms. It also contains an internal 13bp deletion resulting in a premature stop codon at position 328 without a slippery sequence in that region suggestive of potential ribosomal frame slipping.
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_16950
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_01900 (sarT)
TCH60:
—
TW20:
SATW20_17750
USA300_TCH1516:
USA300HOU_1774
VC40:
SAVC_08140
⊟Genome Viewer[edit | edit source]
| COL | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues: