Jump to navigation
Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001798
- pan locus tag?: SAUPAN004627000
- symbol: JSNZ_001798
- pan gene symbol?: —
- synonym:
- product: lipase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001798
- symbol: JSNZ_001798
- product: lipase
- replicon: chromosome
- strand: +
- coordinates: 1844328..1845938
- length: 1611
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561ATGAAATATACAGACAAAATCTATCATAAAGTATCTGACTTTTCTTATTCAAAGTTAAAA
AAAGATAACACTTATAAAATTTTAGGCCAAGATTACAAAGTCATCGAAAAACGCGACGAC
ACCCAGAATGGGTTTAGAGCATATGTTTTCGCTCCAGTAATCAAAGGTAAAGTTGATAAG
AGTCAACTTTTAATAGGTTACGCTGGCACTGACCCATATAGTCTAAATGATATTCGTACT
GATTTACAACTTCCCATTCATCATAACACAAATAATCTAAAAATTAATAATCATTATAAA
GATTTAAAAAACTCAACTATTCACAAAAAATACAATACAATAAAAGATAAAAATGACCTT
TTTAGTTTTTCTTCTAATTTAAATAATAAAGCACTTTTCGGTGATCTATGGGCAGCTAAG
TTTGCACCGACTCAAATGGACGAAAGTGATGCTTTTACTGAATCAGTTAAAAAGAAATAT
CCAGATAGTGAAATTCACCCATTAGGACATAGTTTAGGTGCGTTTTTAGCTCAATATAAT
TTAATAAAACATAATCTGGATAACGGTACAACGTTTGCAGCACCTAACGTATACCATTCA
TTTACTGGAGACTTTAAAAAAGACATTGATAATGGTGTCTATGATTCAAAAATACGCAAT
ATTGGCCATTTTGATGATCCTATTAATAATTTGAATTTTTTTAATCCTCGTATTGGCAAA
AATATTACATCAATGCCACATTATGATGGATTTATAACTAACCTTCCTTTGATTGGTCAA
CACACACTTAAATCTTACAATGATTTCGATGCAGATGGTAATGTGAAGGAAATGCCAGAA
CTTGAACAATTTAATGATGACCAATCTCTTAATAATAGATTTCAATTATTTGACCCATTT
GATATAAAAAGCAGATTTTTCAACTCTATTAAAATCGATAGTTCTATATTAAATAGAACA
AGTGAAAATGATTTTGATCCTTTTGCTATTCTCAATAAAAAAGATAAATTATTCGAATCG
AATGATCTTGATATAGAAGGTTTTAATAATAAACAAAAAGAAGATTTAAGCATTGATTTA
AATCCTTTTGATGATGAATTAAATGATGAGGACGAACCATTAATTCCCAAAAGAGGCGAT
AGTAAAAAATTAAAAGCAGAAAAGAAAATCTCTGTTAAAAAAAACAAAAGTAGTTCCAAA
AATTCAGGCAAAAAAGTAAAAATTCAGTCTGATGAAGTGCGTAATATCGCTAGCACAATT
CGTGATAGACTATTTTTGTATACACAAATAATTACTGCATTGGATGAATATAGAGAAGAA
ACAATATCAGGGGCTAATCGCATTTTAGATAAATATCAATCAGAGCTTCTAAGCGGTTCA
CATGAATTTATAACACCTTACGATCTTGAACAATATATGGAGATTTTAGCAGTTGAGGGA
AGTTCAGGAAATTTCAAGTTTTATAATAGTCGTTTAATGGATGACTTAATTCAGGAATTA
GATCAAAACAAAAAAGACTTGCTACAATTTGCTGAAAAACTAGAATTTGCTGCAAATAAA
TTCGAAGAAAAAGATTTAGAAGAAAGCGATGTTTTTGGACTATTTAGATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1500
1560
1611
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001798
- symbol: JSNZ_001798
- description: lipase
- length: 536
- theoretical pI: 5.68075
- theoretical MW: 61907.7
- GRAVY: -0.76959
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: AB_hydrolase (CL0028) Lipase_3; Lipase (class 3) (PF01764; HMM-score: 18.5)and 2 moreHTH (CL0123) HTH_Tnp_Tc3_2_like; Transposable element Tc3 transposase, HTH (PF21517; HMM-score: 14.2)AB_hydrolase (CL0028) Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 14)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.0003
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.9994
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.020435
- TAT(Tat/SPI): 0.000403
- LIPO(Sec/SPII): 0.002646
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MKYTDKIYHKVSDFSYSKLKKDNTYKILGQDYKVIEKRDDTQNGFRAYVFAPVIKGKVDKSQLLIGYAGTDPYSLNDIRTDLQLPIHHNTNNLKINNHYKDLKNSTIHKKYNTIKDKNDLFSFSSNLNNKALFGDLWAAKFAPTQMDESDAFTESVKKKYPDSEIHPLGHSLGAFLAQYNLIKHNLDNGTTFAAPNVYHSFTGDFKKDIDNGVYDSKIRNIGHFDDPINNLNFFNPRIGKNITSMPHYDGFITNLPLIGQHTLKSYNDFDADGNVKEMPELEQFNDDQSLNNRFQLFDPFDIKSRFFNSIKIDSSILNRTSENDFDPFAILNKKDKLFESNDLDIEGFNNKQKEDLSIDLNPFDDELNDEDEPLIPKRGDSKKLKAEKKISVKKNKSSSKNSGKKVKIQSDEVRNIASTIRDRLFLYTQIITALDEYREETISGANRILDKYQSELLSGSHEFITPYDLEQYMEILAVEGSSGNFKFYNSRLMDDLIQELDQNKKDLLQFAEKLEFAANKFEEKDLEESDVFGLFR
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_001798 > JSNZ_001799
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)