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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002169
  • pan locus tag?: SAUPAN005605000
  • symbol: JSNZ_002169
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002169
  • symbol: JSNZ_002169
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2186203..2186406
  • length: 204
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGAAATATAAACATTTTGCCATTATTACTTTAATTACAGGCATCGTCATGCTCACGGCA
    ATGTACTTTGTACCATTTGGATATCATAAAATACCAATATTTGCAGGAATGGCGATTATT
    TTTACAGTCTATTTTAGTAATAAAAAATCTATTGATGAAACAAATATCTTTAGTAAGAAA
    AATCGCAATAAAAATAAACAATAA
    60
    120
    180
    204

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002169
  • symbol: JSNZ_002169
  • description: hypothetical protein
  • length: 67
  • theoretical pI: 10.6716
  • theoretical MW: 7824.34
  • GRAVY: 0.150746

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved conserved hypothetical protein (TIGR01655; HMM-score: 8.4)
  • TheSEED: data available for COL, NCTC8325
  • PFAM:
    PH (CL0266) DUF2244; Integral membrane protein (DUF2244) (PF10003; HMM-score: 16.1)
    and 1 more
    no clan defined DUF3149; Protein of unknown function (DUF3149) (PF11346; HMM-score: 6.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0002
    • Cytoplasmic Membrane Score: 0.9816
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0181
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.053865
    • TAT(Tat/SPI): 0.000407
    • LIPO(Sec/SPII): 0.031897
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKYKHFAIITLITGIVMLTAMYFVPFGYHKIPIFAGMAIIFTVYFSNKKSIDETNIFSKKNRNKNKQ

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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