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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002459
  • pan locus tag?: SAUPAN006068000
  • symbol: JSNZ_002459
  • pan gene symbol?: —
  • synonym:
  • product: tandem-type lipoprotein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002459
  • symbol: JSNZ_002459
  • product: tandem-type lipoprotein
  • replicon: chromosome
  • strand: -
  • coordinates: 2456925..2457719
  • length: 795
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGATTCATTCAAAGAAATTAACGCTCGGTATATGTTTGGTATTACTCATTATATTGATT
    GTAGGTTATGTCATTATGACAAAAACAAATGGTCGAAACGCTCAAATTAAAGAAACATTT
    AATAAAACATTAAATGTGTATCCAACCAAGAATCTCGATGATTTTTACGATAAAGAAGGC
    TTTCGAGATCAAGAATTTAAAAAGGGTGATAAAGGTACTTGGATAGTTAATTCTGAAATG
    GTAATCGAGCCAAAAGGTAAGGATATGGAAACGAGAGGAATGGTGCTCTATATCAATCGC
    AATACTAGAACCACAAAAGGGTATTATTTTATAAGTGAAATGACAGATGACAGTAACGGC
    AGACCAAAGGATGATGAAAAAAGGTATCCGGTAAAAATGGAACATAATAAAATCATACCA
    ACGAAGCCACTACCGAATGACAAGTTAAAAAAAGAAATTGAAGACTTTAAGTTTTTTGTA
    CAATACGGTGACTTTAAAGATATTAATGATTATAAAGATGGTGACATTTCATATAATCCT
    AATGTTCCAAGTTATTCCGCAAAATATCAATTGAAAAACGATGACTACAATGTGAAGCAA
    CTTCGAAAAAGATATAATATTCCAACCAACAAAGCTCCGAAATTATTAATAAAAGGTGAT
    GGTGATTTAAAAGGCTCATCTGTAGGGTCAAAAAATCTAGAATTTACCTTTGTAGAAAAT
    AAAGAAGAAAACATTTATTTTACAGATTCTGTACAATATACTCCAAGTGAGGATACAAGT
    TATGAGTCAAACTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    795

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002459
  • symbol: JSNZ_002459
  • description: tandem-type lipoprotein
  • length: 264
  • theoretical pI: 8.94503
  • theoretical MW: 30716.6
  • GRAVY: -0.856818

⊟Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 348.5)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 387.7)
    and 1 more
    4HB_MCP (CL0457) 4HB_MCP_1; Four helix bundle sensory module for signal transduction (PF12729; HMM-score: 17.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.849
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.1508
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 31 aa
    • SP(Sec/SPI): 0.616684
    • TAT(Tat/SPI): 0.001111
    • LIPO(Sec/SPII): 0.141998
    • Cleavage Site: CS pos: 31-32. TNG-RN. Pr: 0.1791
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIHSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKETFNKTLNVYPTKNLDDFYDKEGFRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTDDSNGRPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIEDFKFFVQYGDFKDINDYKDGDISYNPNVPSYSAKYQLKNDDYNVKQLRKRYNIPTNKAPKLLIKGDGDLKGSSVGSKNLEFTFVENKEENIYFTDSVQYTPSEDTSYESN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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