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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_002464
- pan locus tag?: SAUPAN006072000
- symbol: JSNZ_002464
- pan gene symbol?: —
- synonym:
- product: tandem-type lipoprotein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_002464
- symbol: JSNZ_002464
- product: tandem-type lipoprotein
- replicon: chromosome
- strand: -
- coordinates: 2460192..2460977
- length: 786
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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121
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481
541
601
661
721
781ATGATTCATTCAAAAAAATTAACGCTCGGTATATGTTTGGTATTACTCATTATATTGATT
GGAGGTTATGTCATTATGACAAAAGAAAATGGTCGAAACGCCCAAATTAAAGACACATTT
AATCAAACATTAAAATTATATCCAACCAAAAATCTCGATGATTTTTACGATAAAGAAGGC
TTTCGAGATCAAGAATTTAAAAAGGGTGATAAAGGTACTTGGATCATTTATTCTGAAATG
GTTATCGAGCCAAAAGGGAAAAATATGGAAACGAGAGGAATGGTGCTTTATATCAATCGC
AATACTAGGACAACAAAAGGTAATTTTATTGTCAATGAAATTACAGATGATAACGATGGT
AGACCCATTGATAATAAAAAGAAATACCCTGTAAAAATGGAACATAATAAAATCATACCA
ACGAAGCCACTACCGAATGACAAGTTAAAAAAAGAGATTGAAAACTTTAAGTTCTTTGTA
CAATATGGCAACTTTAAAGATATTAATGATTATAAAGATGGTGATATTTCATATAATCCT
AATGTACCAAGTTATTCGGCAAAATATCAATTGAATAATGATGATTATAATGTCCAACAG
TTAAGAAAAAGATATGATATTCCAACCAAACAAGCGCCGAAACTATTATTGAAAGGCGAT
GGAGATTTAAAAGGTTCATCCGTAGGTTCTAGAAGTCTTGAATTTACCTTTGTCGAAAAT
AAAGAAGAAAATATCTTTTTTACAGATTCAGTTGAATTTACTCCTAGCGAGGTTGATAAA
TCATGA60
120
180
240
300
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786
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_002464
- symbol: JSNZ_002464
- description: tandem-type lipoprotein
- length: 261
- theoretical pI: 9.21873
- theoretical MW: 30259.2
- GRAVY: -0.773563
⊟Function[edit | edit source]
- TIGRFAM: Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 341.4)
- TheSEED: data available for N315
- PFAM: LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 384.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.8214
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.1783
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 34 aa
- SP(Sec/SPI): 0.437984
- TAT(Tat/SPI): 0.00122
- LIPO(Sec/SPII): 0.294723
- Cleavage Site: CS pos: 34-35. RNA-QI. Pr: 0.1389
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MIHSKKLTLGICLVLLIILIGGYVIMTKENGRNAQIKDTFNQTLKLYPTKNLDDFYDKEGFRDQEFKKGDKGTWIIYSEMVIEPKGKNMETRGMVLYINRNTRTTKGNFIVNEITDDNDGRPIDNKKKYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVENKEENIFFTDSVEFTPSEVDKS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_002461 < JSNZ_002462 < JSNZ_002463 < JSNZ_002464 < JSNZ_002465 < JSNZ_002466
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)