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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_002463
- pan locus tag?: SAUPAN006071000
- symbol: JSNZ_002463
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_002463
- symbol: JSNZ_002463
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2458870..2460195
- length: 1326
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1321ATGAGTCAAACTGAATATCAAATTAAACCCGATAATATAACGAGTAATTCTGAAGAAACG
AGTACTATATCCAAAATTAGTTATGAAATAGAAAACGCAAATAATAGCGGTTTGAAAAAA
CGTAAAATTGATACACAAATAGAAGTTTTTAAAGAAAAAGGTAAGTTTCCAAAAAATTTA
AAATATGTCGATAGTTATACTGACCCCAAAACAGGTACGACTACAAGCGCTTTTTTAAAT
AAAGAGACAGGGAAAGTCACTTTAGGTATGACAGGTACTAATGTACACAAAGACGCCATA
TTTAAAAAAACATTGGGTATTGCCTCTTCTCAAGACAATAGAGATGCGAGTGAAACGCTA
AAGGATATTGGGGCCGATGTCAATATTGGCCTTCATTCCGTCACAGATAAAGATCCACAT
TATAAAAATACCCAAGACTTTATCAAAAATATCAAAAAAGACTATGATATTGATATTATT
ACCGGACATTCGCTGGGCGGTAGAGATGCGATGATTTTAGGTATGAGTAATGATATTAAA
CATATCGTTGTGTATAATCCAGCTCCATTAGCGATCAAAGATGTGAGCGGCCTTTATGCC
GATCAAGAAGAACTTAAAAAATTGATTGAAAAGTACGATGGTCACATTGTAAGATTCGTG
TCTGATGAAGACGAATTAGATGCAGATGTCCGCAATCATTTATATGAAACTGCTGGGGAA
AAAATAGTACTTAAAAATGGAGAAGGCCATTCAATGAGTGGTTTTTTAATAAGCGGAACA
CAGGCTATAATCTTAGCCGAATTAAACAAAGTTAAAGGCTATCAAGACGAAAATAATAAA
TCATTAAAATCCGTTCGTAAACAAACGAGGCATAGATTACATAAAGTAGAGACGTTAAGA
GCGAATTGGATTCAAACAACGGGTGGATCACTCTCTTCCTCCCAACAACAATTATTAGAA
GCTTTAACAGCACTAACCATTGCCGAAGGCTTAAATCAATTAGTGAATGAAGAAAGCCAA
CATTTGAAAAAAATGTATCACGCGATGGCACATAAATTTGGAGACAACTGGAAAAAAACG
CAAGAAGTTGGAAATGAAATTGGTGAAAAATTAACCTCTGAAGAGGTTATAGATGAATTA
AGAAAAGGTGGCGCGTATGAAAGTAAACTTGAAACAGATCCCAAAAGAAAAATTGATGAT
AAGATAAAGAAATTAAATGATGTTTATAAAAATTGTAATGGCTATATCGCAAAAATTAAA
CAGAGTATCGAAGCAATTGTTTCTAATGACCAAATGTTAGCGAGCCAGATTGATGGGATG
ATGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_002463
- symbol: JSNZ_002463
- description: hypothetical protein
- length: 441
- theoretical pI: 6.85839
- theoretical MW: 49359.3
- GRAVY: -0.685261
⊟Function[edit | edit source]
- TIGRFAM: Unknown function Enzymes of unknown specificity probable F420-dependent oxidoreductase, MSMEG_4141 family (TIGR03620; HMM-score: 11.8)and 1 moretwo transmembrane protein (TIGR04527; HMM-score: 7.1)
- TheSEED: data available for COL, N315, NCTC8325, Newman
- PFAM: AB_hydrolase (CL0028) UPF0227; Uncharacterised protein family (UPF0227) (PF05728; HMM-score: 16.5)Lipase_3; Lipase (class 3) (PF01764; HMM-score: 14.8)no clan defined hAT-like_RNase-H; hAT-like transposase, RNase-H fold (PF14372; HMM-score: 13.4)and 5 moreHTH (CL0123) WHD_ROQ1; Disease resistance protein Roq1-like, winged-helix domain (PF23282; HMM-score: 13.1)no clan defined DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 12.9)Gp-FAR-1; Nematode fatty acid retinoid binding protein (Gp-FAR-1) (PF05823; HMM-score: 12.4)Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 12.2)Pilus (CL0327) Pilin; Pilin (bacterial filament) (PF00114; HMM-score: 11.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0003
- Cytoplasmic Membrane Score: 0.0001
- Cell wall & surface Score: 0.0014
- Extracellular Score: 0.9982
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013235
- TAT(Tat/SPI): 0.001441
- LIPO(Sec/SPII): 0.002568
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MSQTEYQIKPDNITSNSEETSTISKISYEIENANNSGLKKRKIDTQIEVFKEKGKFPKNLKYVDSYTDPKTGTTTSAFLNKETGKVTLGMTGTNVHKDAIFKKTLGIASSQDNRDASETLKDIGADVNIGLHSVTDKDPHYKNTQDFIKNIKKDYDIDIITGHSLGGRDAMILGMSNDIKHIVVYNPAPLAIKDVSGLYADQEELKKLIEKYDGHIVRFVSDEDELDADVRNHLYETAGEKIVLKNGEGHSMSGFLISGTQAIILAELNKVKGYQDENNKSLKSVRKQTRHRLHKVETLRANWIQTTGGSLSSSQQQLLEALTALTIAEGLNQLVNEESQHLKKMYHAMAHKFGDNWKKTQEVGNEIGEKLTSEEVIDELRKGGAYESKLETDPKRKIDDKIKKLNDVYKNCNGYIAKIKQSIEAIVSNDQMLASQIDGMM
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_002461 < JSNZ_002462 < JSNZ_002463 < JSNZ_002464 < JSNZ_002465 < JSNZ_002466
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)